View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_high_20 (Length: 282)
Name: NF18593_high_20
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 54607679 - 54607804
Alignment:
| Q |
16 |
ctctcttctcctgttatataactaatattggacccacattccttattttgataacttgggttacgattaatcacacgtccctcttccatgtaataataat |
115 |
Q |
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| T |
54607679 |
ctctcttctcctgttatataactaatattgggcccacattccttattttgataacttgggttacgattaatcacacgtccctcttccatgtaataataat |
54607778 |
T |
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| Q |
116 |
taatatttgtgtaaaattaagaggaa |
141 |
Q |
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| T |
54607779 |
taatatttgtgtaaaattaagaggaa |
54607804 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 54607821 - 54607859
Alignment:
| Q |
192 |
atttgattatatattttgtataatgcatattatgatatc |
230 |
Q |
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| T |
54607821 |
atttgattatatattttgtataatgcatattatgatatc |
54607859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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