View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18593_high_23 (Length: 269)
Name: NF18593_high_23
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_high_23 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 20235466 - 20235221
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20235466 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
20235367 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20235366 |
taccttagcagttatgcagttgaattaccaactccgaaagaacctgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
20235267 |
T |
|
| Q |
208 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20235266 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
20235221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 22129450 - 22129205
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22129450 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
22129351 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22129350 |
taccttagcagttatgcagttgaattaccaactccgaaagaacctgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
22129251 |
T |
|
| Q |
208 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22129250 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
22129205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 20083495 - 20083250
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||| |
|
|
| T |
20083495 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgccagaccttcgatcgtgacagttgcttct |
20083396 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
207 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
20083395 |
tatcttagcagttatgcagttgaattaccaactccaccagaacctgcgtttttcttgcatggtagaacttattcaaatgttcttgcacaagaatcaagtt |
20083296 |
T |
|
| Q |
208 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
253 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||||||||||||||||| |
|
|
| T |
20083295 |
ctactcaatctaccaatagttctgcattattctcaaacaatcaaat |
20083250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 22209684 - 22209929
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
22209684 |
agattattctacaaatgaagtaattaagtacattcagattggtctattatgtgttcaaaatgacccggatgctagaccttcaattgcgacagttgcttct |
22209783 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
207 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |||| || ||||||||| ||||||||||| |
|
|
| T |
22209784 |
tatcttagcagttatgcaattgaattaccaactccaaaagaacctgcgtttttcttgcatggtagaacttattcggacgttcttgcactagaatcaagtt |
22209883 |
T |
|
| Q |
208 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
253 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
22209884 |
ctactcaatctgccaatagttctgcacaattttcaaacaatcaaat |
22209929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 18990551 - 18990307
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| ||||| |
|
|
| T |
18990551 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccggatgctagaccttcgatcgtgacagttgcttct |
18990452 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
207 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| | | |||||||| |||||||||||||||| |||| |
|
|
| T |
18990451 |
tatcttagcatttatgcagttgaattaccaactccaccagaacctgcgtttttcttgcatggtag-agggattcaaacgttcttgcacaagaatctagtt |
18990353 |
T |
|
| Q |
208 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
253 |
Q |
| |
|
|||||||||||||| |||| |||||| |||| |||||||||||||| |
|
|
| T |
18990352 |
ctactcaatctgcccatagttctgcattattttcaaacaatcaaat |
18990307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 18995141 - 18994896
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
18995141 |
agattattctgcaaatgaagtcattaaatgcattcagattggtctgttatgtgttcaaaatgacccgaatgctagaccttcaattgtgacagttgcttct |
18995042 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
207 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |||| || ||||||||| ||||||||||| |
|
|
| T |
18995041 |
tatcttagcagttatgcaattgaattaccaactccaaaagaacctgcgtttttcttgcatggtagaacttattccgacgttcttgcactagaatcaagtt |
18994942 |
T |
|
| Q |
208 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
253 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| ||||||||| |
|
|
| T |
18994941 |
ctactcaatctgccaatagttctgtactattctcaatcaatcaaat |
18994896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 18979194 - 18979033
Alignment:
| Q |
13 |
attctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttcttacct |
112 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||| ||||||||| || ||||||| ||||||| || |
|
|
| T |
18979194 |
attctacaaatgaagtcattaagtgcatttagattggtcgattatgtgttcgaaatgacccggatg-tagaccttcgattgtgacagttccttcttatct |
18979096 |
T |
|
| Q |
113 |
tagcagttatgcagttgaattaccaactccgaaagaaactgcg-tttttcttgcatggtagaa |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||| |
|
|
| T |
18979095 |
tagcagttatgcagttgaattaccaactccgcaagaacctgcgttttttattgcatggtagaa |
18979033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 22085617 - 22085450
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||| || ||||| |
|
|
| T |
22085617 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaggctagaccttcaatcttgacaattgcttct |
22085518 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaaa |
175 |
Q |
| |
|
|| ||||||||| || || |||| ||||||||||| || || |||| |||||| |||| |||||||| |
|
|
| T |
22085517 |
tatcttagcagtcattcaattgagttaccaactccacaacaacctgcatttttcctgcaaggtagaaa |
22085450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 22001558 - 22001393
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||| || ||||| |
|
|
| T |
22001558 |
agattattctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccagaggctagaccttcaatcttgacaattgcttct |
22001459 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtaga |
173 |
Q |
| |
|
|| ||||||||| || || |||| |||| |||||| || || |||| |||||| |||| |||||| |
|
|
| T |
22001458 |
tatcttagcagtcattcaattgagttacgaactccacaacaacctgcatttttcctgcaaggtaga |
22001393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 21967288 - 21967122
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||| |||| || ||||| |
|
|
| T |
21967288 |
agatttttctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgatccagaggctagaccttcaatcttgacaattgcttct |
21967189 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaa |
174 |
Q |
| |
|
|| ||||||||| || || |||| ||||||||||| || || |||| |||||| |||| ||||||| |
|
|
| T |
21967188 |
tatcttagcagtcattcaattgagttaccaactccacaacaacctgcatttttcctgcaaggtagaa |
21967122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 21967734 - 21967569
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||||||| |||| || ||||| |
|
|
| T |
21967734 |
agatttttctaaaactgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgatccagaggctagaccttcaatcttgacaattgcttct |
21967635 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtaga |
173 |
Q |
| |
|
|| ||||||||| || || |||| ||||||||||| || || |||| |||||| |||| |||||| |
|
|
| T |
21967634 |
tatcttagcagtcattcaattgagttaccaactccacaacaacctgcatttttcctgcaaggtaga |
21967569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 18979023 - 18978973
Alignment:
| Q |
203 |
aagttctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
253 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
18979023 |
aagttctactcaatctgccaatagttctgcattattctcaaacaatcaaat |
18978973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 50318 - 50563
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
50318 |
agattattctacaaatgaagtcattaaatgcattcagattggtctgttatgtgttcaaaatgacccgaatgctagaccttcaattgtgacagttgcttct |
50417 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
207 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
50418 |
tatcttagcagttatgcaattgaattaccaactccaaaagaacctgcgtttttcttgcatggtagaacttattccgacgttcttgcacaagaatcaagtt |
50517 |
T |
|
| Q |
208 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
253 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
50518 |
ctactcaatctgccaatagttctgcactattctcaatcaatcaaat |
50563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 14976 - 14731
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
14976 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaaaatgacccgaatgctagaccttcaattgtgacagttgcttct |
14877 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
207 |
Q |
| |
|
|| ||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
14876 |
tatcttagcagttatgcaattgatttaccaactccacaagaacctgcgtttttcttgcatggtagaacttattccgacgttcttgcacaagaatcaagtt |
14777 |
T |
|
| Q |
208 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
253 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
14776 |
ctactcaatctgccaatagttctgcacttttctcattcaatcaaat |
14731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 7852 - 8097
Alignment:
| Q |
8 |
agattattctacaaatgaagtcattaagtgcattcagattggtctattatgtgttcaacatgacccggatgctagaccttcaatctcgacagtttcttct |
107 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
7852 |
agattattctacaaatgaagtcattaaatgcattcagattggtctgttatgtgttcaaaatgacccgaatgctagaccttcaattgtgacagttgcttct |
7951 |
T |
|
| Q |
108 |
taccttagcagttatgcagttgaattaccaactccgaaagaaactgcgtttttcttgcatggtagaaagaattcaaacattcttgcacaagaatcaagtt |
207 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||| |||||| |||||||| ||||||||||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
7952 |
tatcttagcagttatgcaattgaattaccaactccaaaagaacctgcgtttctcttgcatggtagaacttattccgacgttcttgcacaagaatcaagtt |
8051 |
T |
|
| Q |
208 |
ctactcaatctgccaatagctctgcactattctcaaacaatcaaat |
253 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| |||||||||| |
|
|
| T |
8052 |
ctactcaatctgccaatagttctgcacttttctcatacaatcaaat |
8097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 10401169 - 10401124
Alignment:
| Q |
22 |
atgaagtcattaagtgcattcagattggtctattatgtgttcaaca |
67 |
Q |
| |
|
|||| ||||| || ||||||||||||||| |||||||||||||||| |
|
|
| T |
10401169 |
atgaggtcatcaaatgcattcagattggtttattatgtgttcaaca |
10401124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University