View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18593_high_29 (Length: 237)
Name: NF18593_high_29
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_high_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 33115888 - 33115677
Alignment:
| Q |
1 |
cctttcgaaacaaccaacgaggtgattctggcagccaaaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacctccatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33115888 |
cctttcgaaacaaccaacgaggtgattctggcagccaaaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacctccatgt |
33115789 |
T |
|
| Q |
101 |
tccaggtgcctaaacaaatcaataatcaataatgttaaggcagatagaagattatgaaatgaaatatttaatgaatatgaatcacaaatttagtaaaat- |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33115788 |
tccaggtgcctaaacaaatcaataatcaataatgttaaggtagatagaagattatgaaatgaaatatttaatga--atgaatcacaaatttagtaaaata |
33115691 |
T |
|
| Q |
200 |
aaaaaatgcatgga |
213 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33115690 |
aaaaaatgcatgga |
33115677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 21559762 - 21559815
Alignment:
| Q |
66 |
ggtaatgctgctacaccaagcatccacctccatgttccaggtgcctaaacaaat |
119 |
Q |
| |
|
|||| |||||| ||||| | |||||||||||||||||| ||||||| ||||||| |
|
|
| T |
21559762 |
ggtactgctgcaacacctaacatccacctccatgttcctggtgcctgaacaaat |
21559815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University