View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_high_4 (Length: 622)
Name: NF18593_high_4
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 33755595 - 33756188
Alignment:
| Q |
18 |
cttccgaacttctccttcatttccaatcaaaagaccaatttttcccatctttatcatagcagttgcaaaattattaacaaacttctcgccatttgaagca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33755595 |
cttccgaacttctccttcatttccaatcaaaagaccaatttttcccatctttatcatagcagttgcaaaattattaacaaacttctcgccatttgaagca |
33755694 |
T |
|
| Q |
118 |
aaattagacacaaaaggacttgttgattttatccaaagtaagtttttgatcgatctgcaatatacaatatacatttcttaagaagaatttgtaaaataaa |
217 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33755695 |
aaattagacacaaaaagacttgttgattt-atccaaagtaagtttttgatcgatctgcaatatacaatatacatttcttaagaagaatttgtaaaataaa |
33755793 |
T |
|
| Q |
218 |
agaagtattctaatccaaaaatgcagcaccattacctgattcaaacatattcacaagcttagtcggaacattgtattttggtcctccggataaggccaga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33755794 |
agaagtattctaatccaaaaatgcagcaccattacctgattcaaacaaattcacaagcttagtcggaacattgtattttggtcctccggataaggccaga |
33755893 |
T |
|
| Q |
318 |
acatctgttctagccagtgttatgatgtctgcacatgatactgttaaagtacaaataacttctattgtttccttccgctcgtccattggatcatagcctc |
417 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33755894 |
acatctgttctagccagtgttataatgtctgcacatgatactgttaaaggacaaataacttctattgtttccttccgctcgtccattggatcatagcctc |
33755993 |
T |
|
| Q |
418 |
taacagtttcgtttgagtcattttctttctctgaattagtcctatttgttgagtctatatggatagatgcatcacagcctctacacattgatggaaatgt |
517 |
Q |
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| T |
33755994 |
taacagtttcgtttgcgtcattttctttctctgaattagtcctattttttgagtctatgtggatagatgcatcacagcctctacacattgatggaaatgt |
33756093 |
T |
|
| Q |
518 |
atgtcatcgatacaaataaacttttgaataaaaactatcgaaaaattaattcaaaacaattttttaatagatcctaatcttcttatgcctctgtg |
612 |
Q |
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| T |
33756094 |
atgtcatcgatacaaataaacttttgaataaaaactatcgaaaaattaaatcaaaacaattttttaatagatcctaatcttcttatgcctctgtg |
33756188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 607
Target Start/End: Original strand, 33761559 - 33762157
Alignment:
| Q |
18 |
cttccgaacttctccttcatttccaatcaaaagaccaatttttc-ccatctttatcatagcagttgcaaaattattaacaaacttctcgccatttgaagc |
116 |
Q |
| |
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|||||||| ||||||||||||||| | ||||| ||| ||||| |||||||||||||||||||||||||| | ||||||||||| || ||||||||||| |
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| T |
33761559 |
cttccgaatttctccttcatttcctaacaaaaatccattttttttccatctttatcatagcagttgcaaaactcttaacaaacttatcaccatttgaagc |
33761658 |
T |
|
| Q |
117 |
aaaattagacacaaaaggacttgttgattttatccaaagtaagtttttgatcgatctgcaatatacaatatacatttcttaagaagaatttgt------- |
209 |
Q |
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| T |
33761659 |
aaaattagacacaaaaggacttgttgatttaa-ccaaagtaagtttctgatcgatctg-------caatatacctctcttgagaagaaattgttggtaaa |
33761750 |
T |
|
| Q |
210 |
-----------aaaataaaagaagtattctaatccaaaaatgcagcaccattacctgattcaaacatattcacaagcttagtcggaacattgtattttgg |
298 |
Q |
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| |||||||||||| ||||||| ||||| ||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33761751 |
attcattatcaagaataaaagaagtcttctaatacaaaattgcagcatcattgcctgattcaaacaatttcacaagcttagtcggaacattgtattttgg |
33761850 |
T |
|
| Q |
299 |
tcctccggataaggccagaacatctgttctagccagtgttatgatgtctgcacatgatactgttaaagtacaaataacttctattgtttccttccgctcg |
398 |
Q |
| |
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||||||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||| |||| ||| |||||||||||| |||||||||||| ||||| |
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| T |
33761851 |
tcctccggataaggccaaaacatctcttctagaaagtgttaagatgtctgcacatgatattgttgaaggacaaataacttcgattgtttccttcggctcg |
33761950 |
T |
|
| Q |
399 |
tccattggatcatagcctctaacagtttcgtttgagtcattttctttctctgaattagtcctatttgttgagtctatatggatagatgcatcacagcctc |
498 |
Q |
| |
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|| ||| ||||||||||||||||||||||||||| |||||||| ||||||||| || || |||||||||||| |||| | | |||||||||||| || | |
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| T |
33761951 |
tctattagatcatagcctctaacagtttcgtttgcgtcattttatttctctgatttcgtgctatttgttgag-ctatgagaagagatgcatcacaacccc |
33762049 |
T |
|
| Q |
499 |
tacacattgatggaaatgtatgtcatcgatacaaataaacttttgaataaaaactatcgaaaaattaattcaaaacaattttttaatagatcctaatctt |
598 |
Q |
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| T |
33762050 |
tacacattgatggaaatgtatgttatcgatacaaataaacttttgaataaaaactatcg-aaaattaaatcaaaacaattttttaatagatcccaatctt |
33762148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 33763621 - 33763775
Alignment:
| Q |
27 |
ttctccttcatttccaatcaaaagaccaatttttcccatctttatcatagcagttgcaaaattattaacaaacttctcgccatttgaagcaaaattagac |
126 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||| ||||||||||||||||| ||||| ||| | ||||||||||| || ||||||||||||||||||||| |
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| T |
33763621 |
ttctccttcatttccaaccaaaactccaactttccccatctttatcatagcggttgcgaaactcttaacaaacttatcaccatttgaagcaaaattagac |
33763720 |
T |
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| Q |
127 |
acaaaaggacttgttgattttatccaaagtaagtttttgatcgatctgcaatatac |
182 |
Q |
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| T |
33763721 |
acaaaagtacttgttga-tttatccaaagcaagttgctgatcaatctgcattatac |
33763775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 18 - 161
Target Start/End: Complemental strand, 33755441 - 33755299
Alignment:
| Q |
18 |
cttccgaacttctccttcatttccaatcaaaagaccaatttttcccatctttatcatagcagttgcaaaattattaacaaacttctcgccatttgaagca |
117 |
Q |
| |
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||||| || |||||||||||||||| ||||| |||||||| | ||||||||||||||| ||||||||| ||||||||||| || |||||||||| | |
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| T |
33755441 |
cttcctaatttctccttcatttccacccaaaactccaattttccacatctttatcatagcggttgcaaaacacttaacaaacttatcaccatttgaagta |
33755342 |
T |
|
| Q |
118 |
aaattagacacaaaaggacttgttgattttatccaaagtaagtt |
161 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||| ||||| |
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| T |
33755341 |
aaattagacacaaaatgacttgttga-tttatccaaagcaagtt |
33755299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 355
Target Start/End: Original strand, 33764120 - 33764193
Alignment:
| Q |
282 |
ggaacattgtattttggtcctccggataaggccagaacatctgttctagccagtgttatgatgtctgcacatga |
355 |
Q |
| |
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|||| |||||||||||||||||| |||||||||| | ||||| || |||| |||| || ||||||||||||||| |
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| T |
33764120 |
ggaatattgtattttggtcctccagataaggccacagcatctcttgtagcaagtgctacgatgtctgcacatga |
33764193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 33763818 - 33763853
Alignment:
| Q |
214 |
taaaagaagtattctaatccaaaaatgcagcaccat |
249 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
33763818 |
taaaagaagtattctgatccaaaaatgcagcaccat |
33763853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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