View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_10 (Length: 444)
Name: NF18593_low_10
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 83 - 439
Target Start/End: Complemental strand, 30020097 - 30019746
Alignment:
| Q |
83 |
ggttttatatatacttctccttagaaatgtaatattcatatactatagcattgnnnnnnntaatcaagatattgcatacgaaagaataattttgttaagt |
182 |
Q |
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| T |
30020097 |
ggttttatatatacttctccttagaaatgtaatattcatatactatagcattgaaaaaa-taatcaagataatgcatacgaaagaataattttgttaagt |
30019999 |
T |
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| Q |
183 |
ttgaaattgagggtgtaatatatatgcaacatatatagaagaaaaccaaatgatgatttcacacacaaacatgcattttatacctgggatacttgctgtt |
282 |
Q |
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| T |
30019998 |
ttgaaattgagggtgcaatatatatgcaacata----gaagaaaaccaaatgatgatttcacacacaaacatgcattttatacctgggatacttgctgtt |
30019903 |
T |
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| Q |
283 |
cttgacagctttttgtccatatttcctccaacgataaccatcatccaaaatatcatcaacacttcttgtctgaaatgcaaaccttggcacttttgttgtc |
382 |
Q |
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| T |
30019902 |
cttgacagctttttgtccatatttcctccaacgataaccatcatccaaaatatcatcaacacttcttgtctgaaatgcaaaccttggcacttttgtggtc |
30019803 |
T |
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| Q |
383 |
ttcttcactctcccacctttaacccttttctcctctaacttgtttccctttgcttct |
439 |
Q |
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| T |
30019802 |
ttcttcactctcccacctttaacccttttctcctctaacttgtttcccttttcttct |
30019746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 9606942 - 9606879
Alignment:
| Q |
264 |
acctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatc |
327 |
Q |
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| T |
9606942 |
acctgggaaatttgttgtttttaacagctttttggccatatttcctccatctataaccatcatc |
9606879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 327
Target Start/End: Complemental strand, 9834513 - 9834450
Alignment:
| Q |
264 |
acctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatc |
327 |
Q |
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|||||||| | ||| |||| || ||||||||||| |||||||||||||| | |||||||||||| |
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| T |
9834513 |
acctgggaaatttgttgtttttaacagctttttggccatatttcctccatctataaccatcatc |
9834450 |
T |
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