View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_11 (Length: 417)
Name: NF18593_low_11
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 14105330 - 14105539
Alignment:
| Q |
7 |
gaagcaaaggatagtcaaagtggctataaataagtaacttagaatgtttgaaacaatttggaaatatgttaagtagtatagtgtatacttcctatatggc |
106 |
Q |
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| T |
14105330 |
gaagcaaaggatagtcaaagtggctataaataagtaacttagaatgtttgaaacaatttggaaatatgttaagtagtatagtgtatacttcctttatggc |
14105429 |
T |
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| Q |
107 |
tttgaacattttggatcacttatttactgttaatatttagtattgtagtgatctgcaatgtttatttccataaagtaagttataaacacttcctaaacca |
206 |
Q |
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| T |
14105430 |
tttgaacattttggatcacttatttactgttaatatttagtattgtagtgatctgcaatgtttatttccataaagtaagttataaacacttcctaaacca |
14105529 |
T |
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| Q |
207 |
gagattaaca |
216 |
Q |
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| T |
14105530 |
gagattaaca |
14105539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 261 - 396
Target Start/End: Original strand, 14105585 - 14105720
Alignment:
| Q |
261 |
cattacttgaaaattgtatacattattgatttgaatcattgcttattacatcatgcgtttcttcatatatcatcatctattgctggtatttagtttttaa |
360 |
Q |
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| T |
14105585 |
cattacttgaaaattgtatccattattgatttgaatcattgcttattacatcatgcgcttcttcatatatcatcatctattgctggtatatagtttttaa |
14105684 |
T |
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| Q |
361 |
aatttgtgggtaatttgcctcaaattctatgatacc |
396 |
Q |
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| T |
14105685 |
aatttgtgggtaatttgcctcaaattctatgatacc |
14105720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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