View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_12 (Length: 372)
Name: NF18593_low_12
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 32032278 - 32031926
Alignment:
| Q |
8 |
gagcagagagataacgacaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaagaccttccc |
107 |
Q |
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| T |
32032278 |
gagcagagagataacgacaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaagaccttccc |
32032179 |
T |
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| Q |
108 |
aaagagaaatctaagcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagct |
207 |
Q |
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| T |
32032178 |
aaagagaaatctaagcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcataagct |
32032079 |
T |
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| Q |
208 |
ttccaacaccttgagttatccttgtggtagaaataccca------tcacaatcattggtacatttgtttccacatgtatcttcacttactctatcaccag |
301 |
Q |
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| T |
32032078 |
ttccaacaccttgagttatccttgtggtagaaatacccaacacacttacaatccttggtacatttgtttccacatgcatcttcacttacactatcaccag |
32031979 |
T |
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| Q |
302 |
tagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaat |
354 |
Q |
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| T |
32031978 |
tagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaat |
32031926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 24 - 354
Target Start/End: Complemental strand, 32065423 - 32065066
Alignment:
| Q |
24 |
acaactttattgcaatctaaaaccactagtaggaaataactatattaaattgatacaattaaaatacaataccaa---------------------gacc |
102 |
Q |
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| T |
32065423 |
acaactttattgcattctaaaacaactagtaggaaataacaaaattaaattgatacaattaaaatacaataccaaaaaaaaaaaaaaaaataccaagacc |
32065324 |
T |
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| Q |
103 |
ttcccaaagagaaatctaagcttatcttactacttattaggaaccttaataaaacccacgtgtgtagtattttctactttagtaagggtttgaagatcat |
202 |
Q |
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| T |
32065323 |
ttcccatggaaaaatctaagcttatcttattacttattaggcaccttaatataacccacatgtgtggtattttgaactctagtaagagtttgaagatcat |
32065224 |
T |
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| Q |
203 |
aagctttccaacaccttgagttatccttgtggtagaaataccca------tcacaatcattggtacatttgtttccacatgtatcttcacttactctatc |
296 |
Q |
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||||| ||||||||||||| | |||||| ||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
32065223 |
aagctatccaacaccttgattcatccttatggtagaaatacccaacacacttacaatcattggtacatttgtttccacatgcatcttcacttactatatc |
32065124 |
T |
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| Q |
297 |
accagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaat |
354 |
Q |
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| T |
32065123 |
accactagtgtatttgttcatgtaatgctcaactccttcaattttgtagtaatgaaat |
32065066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 32072458 - 32072390
Alignment:
| Q |
285 |
acttactctatcaccagtagtgtatttgctcatgtagtgctcaactccttcaattttgtagtaatgaaa |
353 |
Q |
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|||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
32072458 |
acttactctatcaccaacagtgtatttgctcatataatgctcaactccttcaattttgtagtaatgaaa |
32072390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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