View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_13 (Length: 370)
Name: NF18593_low_13
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 3884552 - 3884881
Alignment:
| Q |
1 |
gaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaaccttgtgaagctcttatccnnnnnnnctgataaagatatgactaaa |
100 |
Q |
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| T |
3884552 |
gaaaacaataccaccagaagaac-accaactctatgaatccaattacgatcaaaccttgtgaagctcttatctaaaaaagctgataaagatatgactaaa |
3884650 |
T |
|
| Q |
101 |
accaatacaaaaagcaacattggtaaccataaagtaacactaattggttgttcatcatcttccaattcactctctgatctgtgatctatgtatagaggag |
200 |
Q |
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| T |
3884651 |
accaatacaaaaagcaacattggtaaccataaagtaacactaataggttgttcatcatcttccaattcactctctgatctgtgatctatgtatagaggag |
3884750 |
T |
|
| Q |
201 |
aagccacagctagaactaccaagcttatggctgctgctctctcaaatgaagaaaatttgcttcccctcctattagcttcaagttccattcaaaagattga |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3884751 |
aagccacagctagaactaccaagcttatggctgctactctctcaaatgaagaaaatttgcttcccctcctattagcttcaagttccattcaaaagattga |
3884850 |
T |
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| Q |
301 |
tttagatgataaaaaattatgttcggggaaa |
331 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3884851 |
tttagatgataaaaaattatgttcggggaaa |
3884881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 3874023 - 3874331
Alignment:
| Q |
1 |
gaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaaccttgtgaagctcttatccnnnnnnnctgataaagatatgactaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3874023 |
gaaaacaataccaccagaagaaccaccaactctatgaatccaattacgatcaaaccttgtgaagctcttatccaaaaaagctgataaagatatgactaaa |
3874122 |
T |
|
| Q |
101 |
accaatacaaaaagcaacattggtaaccataaagtaacactaattggttgttcatcatcttccaattcactctctgatctgtgatctatgtatagaggag |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3874123 |
accaatacaaaaagtaacattggtaaccataaagtaacactaattggttgttcatcatcttccaactcactctctgatctgtgatctatgtatagaggag |
3874222 |
T |
|
| Q |
201 |
aagccacagctagaactaccaagcttatggctgctgctctctcaaatgaagaaaatttgcttcccctcctattagcttcaagttccattcaaaagattga |
300 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||| | || ||||||||| ||||||||| |||||||| |||||||||| |||||||| |
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| T |
3874223 |
aagccacagctagaactactaagcttatggctgctactctctcataagatgaaaatttgtgacccctcctactagcttcaggttccattcagaagattga |
3874322 |
T |
|
| Q |
301 |
tttagatga |
309 |
Q |
| |
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||||||||| |
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| T |
3874323 |
tttagatga |
3874331 |
T |
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