View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_16 (Length: 346)
Name: NF18593_low_16
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 68 - 330
Target Start/End: Complemental strand, 19240741 - 19240480
Alignment:
| Q |
68 |
gtccgactgaacttcctaaaatgttcctgcgtgactaaaaaataacatgagttagcttctaaagtgcactgtataatatcagattttccaatctcaacat |
167 |
Q |
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| T |
19240741 |
gtccgattgaacttcctaaaatgtttctgcgtgacttaaaaataacatgagttagcttctgaagtgcagtgtatattatcggattttccaatctcaacat |
19240642 |
T |
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| Q |
168 |
attatttctctacacgtctcaatttctagcatcttatcaaccaaagatcactatataatatttgaatttgcaattgaccaaagatcccatgaaatttgca |
267 |
Q |
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| T |
19240641 |
attatttctctacacgtctcaatttctagcatcttatcagccgaagatcactgtataatattggaatttgcaattgaccaaagatcccatgaaatttgca |
19240542 |
T |
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| Q |
268 |
attgaccaaggggaaaagaaaaggaaagagctataatttatttcgtagcgctgtacaagatca |
330 |
Q |
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| T |
19240541 |
attga-catggggaaaagaaaaggaaagagctataatttatttcgtagcgctgtacaagatca |
19240480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 19244673 - 19244617
Alignment:
| Q |
17 |
ctgtgggttaaacttaaaaattctgctcttttctaaacacattttgctcgcgtccga |
73 |
Q |
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| T |
19244673 |
ctgtgggttaaacttaaaaattatgctcttttctgaacacattttgctcgcgtccga |
19244617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 55547832 - 55547788
Alignment:
| Q |
151 |
ttttccaatctcaacatattatttctctacacgtctcaatttcta |
195 |
Q |
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| T |
55547832 |
ttttccattctcagcatattctttctctacacgtctcaatttcta |
55547788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 105 - 330
Target Start/End: Original strand, 39643170 - 39643395
Alignment:
| Q |
105 |
aaaaataacatgagttagcttctaaagtgcactgtataatatcagattttccaatctcaacatattatttctctacacgtctcaatttctagcatcttat |
204 |
Q |
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| T |
39643170 |
aaaaacaacatgagtcagcttctaaagtgcactgtataatatcggatttttcaatctcaatatattctttctctacacgtctcaatttctagcatcttat |
39643269 |
T |
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| Q |
205 |
caaccaaagatcactatataatatttgaatttgcaattgaccaaagatcccatgaaatttgcaattgaccaaggggaaaagaaaaggaaagagctataat |
304 |
Q |
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| T |
39643270 |
caaccgaagatcactgtataatattggaatttgcaattgaccaaagatcccatgaaatttgtaattgaccaaggggaaaagaaaaggaaagagctataat |
39643369 |
T |
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| Q |
305 |
ttatttcgtagcgctgtacaagatca |
330 |
Q |
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| T |
39643370 |
ttgtttcgtagtgctgtacaatatca |
39643395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 26170177 - 26170243
Alignment:
| Q |
35 |
aattctgctcttttctaaacacattttgctcgcgtccgactgaacttcctaaaatgttcctgcgtga |
101 |
Q |
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| T |
26170177 |
aattctgctctttactcaacacaatttgctcgcgcccaactgaaattccaaaaatactcctgcgtga |
26170243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 8360101 - 8360155
Alignment:
| Q |
35 |
aattctgctcttttctaaacacattttgctcgcgtccgactgaacttcctaaaat |
89 |
Q |
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| T |
8360101 |
aattctgctcttctcccaacacattttgctcgcgctcaactgaacttcctaaaat |
8360155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 22754866 - 22754818
Alignment:
| Q |
52 |
aacacattttgctcgcgtccgactgaacttcctaaaatgttcctgcgtg |
100 |
Q |
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| T |
22754866 |
aacacattttgctcgcgttcaactgaacttcccaaaatattcttgcgtg |
22754818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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