View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_20 (Length: 306)
Name: NF18593_low_20
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 55 - 288
Target Start/End: Complemental strand, 54791988 - 54791755
Alignment:
| Q |
55 |
gtacctcctcacgggctttacgctgcatactccttgactctaataatnnnnnnnnnnnnnnnnngtgagacagacatttttgtagcattaaaacctataa |
154 |
Q |
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| T |
54791988 |
gtacctcctcacgggctttacgctgcatactccttgactctaataataaaataaaaataaaaaagtgagacagacatttttgtagcattaaaacctataa |
54791889 |
T |
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| Q |
155 |
gnnnnnnnctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatc |
254 |
Q |
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| T |
54791888 |
gtttttttctactcttctgcttcaatgatcatacaagaatagaaaaaaatacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatc |
54791789 |
T |
|
| Q |
255 |
agattctaacagacattatacaaaccttcaacaa |
288 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
54791788 |
agattctaacagacattatacaaaccttcaacaa |
54791755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 59 - 288
Target Start/End: Original strand, 54777160 - 54777391
Alignment:
| Q |
59 |
ctcctcacgggctttacgctgcatactccttgactctaataatnnnnnnnnnnnnnnnnngtgagacagacatttttgtagcattaaaacctat--aagn |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
54777160 |
ctcctcacgggctttacgctgcatactccttgactctaataataaaataaaaataaaaaagtgagacagacatttttgtagcattaaaacctatgcaagt |
54777259 |
T |
|
| Q |
157 |
nnnnnnctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcag |
256 |
Q |
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| T |
54777260 |
ttttttctactcttctgcctcaatgatcgtacaagaatagaaaaacatacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcag |
54777359 |
T |
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| Q |
257 |
attctaacagacattatacaaaccttcaacaa |
288 |
Q |
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| T |
54777360 |
attctaacagacattatacaaaccttcaacaa |
54777391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 163 - 288
Target Start/End: Complemental strand, 52284538 - 52284413
Alignment:
| Q |
163 |
ctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataaggcaaaatcagattcta |
262 |
Q |
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||||||| |||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
52284538 |
ctactctactgcttcaatgaacgtacaagaatataaaaacatacatggccaaacttgaagcacacggcctttacatacaataagacaaaatcagattcta |
52284439 |
T |
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| Q |
263 |
acagacattatacaaaccttcaacaa |
288 |
Q |
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| T |
52284438 |
acagaaattatacaaaccttcaacaa |
52284413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 237 - 288
Target Start/End: Complemental strand, 799734 - 799683
Alignment:
| Q |
237 |
atacaataaggcaaaatcagattctaacagacattatacaaaccttcaacaa |
288 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
799734 |
atacaataaggcaaaatcagattataacagaaattatacaaaccttcaacaa |
799683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 799836 - 799796
Alignment:
| Q |
55 |
gtacctcctcacgggctttacgctgcatactccttgactct |
95 |
Q |
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| T |
799836 |
gtacctcatcacgagctttacgctgcatgctccttgactct |
799796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 52284655 - 52284615
Alignment:
| Q |
55 |
gtacctcctcacgggctttacgctgcatactccttgactct |
95 |
Q |
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||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
52284655 |
gtacctcttcacgagctttacgctgcatgctccttgactct |
52284615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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