View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18593_low_21 (Length: 282)
Name: NF18593_low_21
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 53884825 - 53885101
Alignment:
| Q |
10 |
gttacaaatctagcgacgggtacggtccacgggtttataataaatctatgtttgtttg----ggttgggggtattgtttatatttatcgtcgttatcttt |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53884825 |
gttacaaatctagcggcgggtacggtccacgggtttataataaatctatgtttgtttgtttgggttgggggtattgtttatatttatcgtcgttatcttt |
53884924 |
T |
|
| Q |
106 |
cttttttatcttcaaaccaaattaattcacggattccatttcattccaaagaggcatatgctgctatagattcccctccgttagagagtaattgat---- |
201 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53884925 |
ctttt-tatcttcaaaccaaattaattcacggattccatttcattccaaaggggcatatgctgctatagattcccctccgttagagagtaattgatgcct |
53885023 |
T |
|
| Q |
202 |
------------atgggtgagatcaaatctctgtaaagtttgttaaactacggatttggatttcgtgttatagaaaag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
53885024 |
catgagtaatgaatgggtgagatcaaatctctgtaaagttggttaaactacggatttgaatttggcgttatagaaaag |
53885101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 53890939 - 53891215
Alignment:
| Q |
10 |
gttacaaatctagcgacgggtacggtccacgggtttataataaatctatgtttgtttg----ggttgggggtattgtttatatttatcgtcgttatcttt |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53890939 |
gttacaaatctagcggcgggtacggtccacgggtttataataaatctatgtttgtttgtttgggttgggggtattgtttatatttatcgtcgttatcttt |
53891038 |
T |
|
| Q |
106 |
cttttttatcttcaaaccaaattaattcacggattccatttcattccaaagaggcatatgctgctatagattcccctccgttagagagtaattgat---- |
201 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53891039 |
ctttt-tatcttcaaaccaaattaattcacggattccatttcattccaaaggggcatatgctgctatagattcccctccgttagagagtaattgatgcct |
53891137 |
T |
|
| Q |
202 |
------------atgggtgagatcaaatctctgtaaagtttgttaaactacggatttggatttcgtgttatagaaaag |
267 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||| |
|
|
| T |
53891138 |
catgagtaatgaatgggtgagatcaaatctctgtaaagttggttaaactacggatttgaatttggcgttatagaaaag |
53891215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University