View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18593_low_23 (Length: 281)

Name: NF18593_low_23
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18593_low_23
NF18593_low_23
[»] chr8 (2 HSPs)
chr8 (123-265)||(16750368-16750510)
chr8 (35-124)||(16750663-16750752)
[»] chr4 (14 HSPs)
chr4 (1-75)||(7722689-7722763)
chr4 (1-75)||(7481649-7481723)
chr4 (1-75)||(7129415-7129489)
chr4 (1-66)||(7527768-7527833)
chr4 (1-75)||(7494051-7494125)
chr4 (1-75)||(7519718-7519792)
chr4 (1-66)||(7714411-7714476)
chr4 (136-257)||(7494340-7494461)
chr4 (136-257)||(7714066-7714187)
chr4 (141-257)||(7481943-7482059)
chr4 (37-75)||(7506351-7506389)
chr4 (136-257)||(7129079-7129200)
chr4 (175-257)||(7528096-7528178)
chr4 (141-257)||(7520012-7520128)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 123 - 265
Target Start/End: Complemental strand, 16750510 - 16750368
Alignment:
Q  123 agttatgaggcagagagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacact 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16750510 agttatgaggcagagagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgacgaaaagaaggatttgataaagttattgttgaacact 16750411  T
Q  223 gacatcgatgtcaaaggaaatgtttcagttatttccatcattg 265  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16750410 gacatcgatgtcaaaggaaatgtttcagttatttccatcattg 16750368  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 16750752 - 16750663
Alignment:
Q  35 ctcaaagatgctcttgatgatgctgatgacttgcttgatgatgtttttactgaagacttgtagcgtcaagtactgacaaaagacaagaag 124  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16750752 ctcaaagatactcttgatgatgctgatgacttgcttgatgatgtttttactgaagacttgtagcgtcaagtactgacaaaagacaagaag 16750663  T

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Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7722763 - 7722689
Alignment:
Q  1 caacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgcttgatga 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  7722763 caacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatga 7722689  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7481649 - 7481723
Alignment:
Q  1 caacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgcttgatga 75  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||    
T  7481649 caacaaccatcaagttcaactctggctggaaaagctcaaagatgctcttgatgatgccgatgacttgctcgatga 7481723  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7129489 - 7129415
Alignment:
Q  1 caacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgcttgatga 75  Q
    ||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||| |||||||||||||||||    
T  7129489 caacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatga 7129415  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 7527768 - 7527833
Alignment:
Q  1 caacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgctgatgactt 66  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| ||||||||    
T  7527768 caacaaccatcaagttcaactatggctggaaaatctcaaagatgcttttgatgatgccgatgactt 7527833  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7494051 - 7494125
Alignment:
Q  1 caacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgcttgatga 75  Q
    ||||||||||||||||||||| ||| | ||||| || |||||||||||||||||||| ||||||||||| |||||    
T  7494051 caacaaccatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgatgacttgctcgatga 7494125  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7519718 - 7519792
Alignment:
Q  1 caacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgctgatgacttgcttgatga 75  Q
    ||||||||||||||||||||| ||| | ||||| || |||||||||||||||||||| ||| |||||||||||||    
T  7519718 caacaaccatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgataacttgcttgatga 7519792  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7714476 - 7714411
Alignment:
Q  1 caacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgctgatgactt 66  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  7714476 caacaaccatgaagttcaactatggctggaaaatctcaaagatgctctttatgatgccgatgactt 7714411  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 257
Target Start/End: Original strand, 7494340 - 7494461
Alignment:
Q  136 agagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtca 235  Q
    |||| |||||| ||||| |||||||||||| |||| || |||||||| ||||| |||||  | |||||| |||| ||||| ||||| | || | |||| |    
T  7494340 agagaaactcactcctttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagttgttgtttaacaccggcaacaatgtga 7494439  T
Q  236 aaggaaatgtttcagttatttc 257  Q
    |||  |||||||||||||||||    
T  7494440 aagagaatgtttcagttatttc 7494461  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 7714187 - 7714066
Alignment:
Q  136 agagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtca 235  Q
    |||| |||||| ||||| |||| ||||||| |||| || |||||||| ||||| ||||| || |||||| |||| ||||| ||||| | || |||||| |    
T  7714187 agagaaactcactcctttattcttgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaacgatgtga 7714088  T
Q  236 aaggaaatgtttcagttatttc 257  Q
    | |  |||||||||||||||||    
T  7714087 aggagaatgtttcagttatttc 7714066  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 257
Target Start/End: Original strand, 7481943 - 7482059
Alignment:
Q  141 aactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaagga 240  Q
    |||||| ||||| |||||||||||| |||| || |||||||| ||||| ||||| || |||||| |||| ||||| ||||| | || | |||| ||||      
T  7481943 aactcactcctttattcgtgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaacaatgtgaaagag 7482042  T
Q  241 aatgtttcagttatttc 257  Q
    ||||||||| |||||||    
T  7482043 aatgtttcaattatttc 7482059  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Original strand, 7506351 - 7506389
Alignment:
Q  37 caaagatgctcttgatgatgctgatgacttgcttgatga 75  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  7506351 caaagatgctcttgatgatgctgatgacttgctcgatga 7506389  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 257
Target Start/End: Complemental strand, 7129200 - 7129079
Alignment:
Q  136 agagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtca 235  Q
    |||| |||||| ||||| |||||||||||| |||| || |||||||| ||||| |||||  | |||||| |||| ||||| ||||| | || | |||| |    
T  7129200 agagaaactcactcctttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagttgttgtttaacaccggcaacaatgtga 7129101  T
Q  236 aaggaaatgtttcagttatttc 257  Q
    |||  ||||||||| |||||||    
T  7129100 aagagaatgtttcaattatttc 7129079  T

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Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 7528096 - 7528178
Alignment:
Q  175 ggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttc 257  Q
    |||||||| ||||||||||| || |||||| |||| ||||| ||||||  || | |||| ||||  |||||||||||||||||    
T  7528096 ggaagagatgaggaaaagaaagagttgatagagttgttgtttaacactagcaacaatgtgaaagagaatgtttcagttatttc 7528178  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 257
Target Start/End: Original strand, 7520012 - 7520128
Alignment:
Q  141 aactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaagga 240  Q
    |||||| ||||| |||||||  ||| |||| || |||||||| ||||| ||||| || |||||| |||| ||||| ||||||  || | |||| | ||      
T  7520012 aactcactcctttattcgtgcagaagaagttattggaagagaggaggagaagaaagagttgatagagttgttgtttaacactagcaacaatgtgacagag 7520111  T
Q  241 aatgtttcagttatttc 257  Q
    |||||||||||||||||    
T  7520112 aatgtttcagttatttc 7520128  T

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