View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_25 (Length: 269)
Name: NF18593_low_25
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_25 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 41756261 - 41756530
Alignment:
| Q |
1 |
atcacaatcctaattcatttcacaggtaaatattgcataacannnnnnnn-atatctaaaacattttactaacataattacatttgattggcttgatacg |
99 |
Q |
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| T |
41756261 |
atcacaatcctaattcatttcacaggtaaatattgcataacatttttttttatatctaaaacattttactaacataattacatttgattggcttgatacg |
41756360 |
T |
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| Q |
100 |
attcactcaccttacttcgccaaattgctatttgttatataacaggagttatttagaaatggagaaacaattcaaagtatttgtgtatgaagaaggggag |
199 |
Q |
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| T |
41756361 |
attcactcaccttacttcgccaaattgttatttgttatataacaggagttatttagaaatggagaaacaattcaaagtatttgtgtatgaagaaggggag |
41756460 |
T |
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| Q |
200 |
cctccggttttccataatggaccttgcaaaagtatatactccatggaaggaaatttcatccatgctattg |
269 |
Q |
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| T |
41756461 |
cctccggttttccataatggaccttgcaaaagtatatactccatggaaggaaatttcatccatgctattg |
41756530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 41764337 - 41764462
Alignment:
| Q |
134 |
ttatataacaggagttatttagaaatggagaaacaattcaaagtatttgtgtatgaagaaggggagcctccggttttccataatggaccttgcaaaagta |
233 |
Q |
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|||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| | || |
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| T |
41764337 |
ttatttaacaggagttacttagaaatggagaaacggttcaaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagata |
41764436 |
T |
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| Q |
234 |
tatactccatggaaggaaatttcatc |
259 |
Q |
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| T |
41764437 |
tatactccatggaaggaattttcatc |
41764462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 141 - 269
Target Start/End: Complemental strand, 26974161 - 26974033
Alignment:
| Q |
141 |
acaggagttatttagaaatggagaaacaattcaaagtatttgtgtatgaagaaggggagcctccggttttccataatggaccttgcaaaagtatatactc |
240 |
Q |
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||||||| || ||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||| || ||||||||||||||||| |||||||| |
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| T |
26974161 |
acaggagctacttagaaatggagaaacagttcaaagtattcgtctacgaagaaggggagcctccggtttttcacaatggaccttgcaaaagcatatactc |
26974062 |
T |
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| Q |
241 |
catggaaggaaatttcatccatgctattg |
269 |
Q |
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| T |
26974061 |
catggaagggaacttcattcatgctattg |
26974033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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