View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_27 (Length: 259)
Name: NF18593_low_27
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 46930785 - 46931022
Alignment:
| Q |
18 |
aaaagaggaggtaaagaaagttgcttgaaaaccatagatgataataattggccagtgaggattcaaataattaaaatgtgaagtgcattcattatgtgat |
117 |
Q |
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| T |
46930785 |
aaaagaggaggtaaagaaagttgcttgaaaaccatagatgataataattggccagtgaggattcaaataattaaaatgtgaagtgcattcattctgtgat |
46930884 |
T |
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| Q |
118 |
aataagtgaaagtaaaagagtagggacgcagaagcagatagatagatagaggggccaaagcaaaacaatgggagaatgatgactaattatatcggataga |
217 |
Q |
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| T |
46930885 |
aataagtgaaagtaaaagagtagggacgcagaagcagatagatagatagaggggccaaagcaaaacaatgggagaatgatgactaattatatcggataga |
46930984 |
T |
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| Q |
218 |
tatctcaactgattattttgataatgcctatgcttctc |
255 |
Q |
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| T |
46930985 |
tatctcaactgattattttgataatgcctatgattctc |
46931022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 32838421 - 32838498
Alignment:
| Q |
18 |
aaaagaggaggtaaagaaagttgcttgaaaaccatagatgataataattggccagtgaggattcaaataattaaaatg |
95 |
Q |
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| T |
32838421 |
aaaagaggaggtaaggaaagttgcttgaaaaccatagatcataataattggccagtgaggattcaaataattaaaatg |
32838498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 33294360 - 33294283
Alignment:
| Q |
18 |
aaaagaggaggtaaagaaagttgcttgaaaaccatagatgataataattggccagtgaggattcaaataattaaaatg |
95 |
Q |
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| T |
33294360 |
aaaagaggaggtaaggaaagttgcttgaaaaccatagatcataataattggccagtgaggattcaaataattaaaatg |
33294283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 5723540 - 5723617
Alignment:
| Q |
18 |
aaaagaggaggtaaagaaagttgcttgaaaaccatagatgataataattggccagtgaggattcaaataattaaaatg |
95 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
5723540 |
aaaagaggaggtaatgaaaattgcttgaaaaccatagatcataataattggtcagtgaggattcaaataattaaaatg |
5723617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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