View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_28 (Length: 251)
Name: NF18593_low_28
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 42772341 - 42772099
Alignment:
| Q |
1 |
atgcacctttgaaaaacgtgattggacaaaattacaggcctttccacaacgcttatgctgaattgttattaacaaagtaacagagagggtgaatttagtt |
100 |
Q |
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| T |
42772341 |
atgcacctttgaaaaacgtgattggacaaaattacaggcctttccacaacgcttatgctgaattgttattaacaaagtaacagagagggtgaatttagtt |
42772242 |
T |
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| Q |
101 |
ttacaacagttacaaaaaagttataaaagcaaaggaatgcttatattttttctgaaacttgtttctaagacaaaaatttcaaatgagaaaaccaatgtct |
200 |
Q |
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| T |
42772241 |
ttacaacagttacaaaaaagttataaaagcaaaggaatgcttatat-ttttctgaaacttgtttctaagacaataatttcaaatgagaaaaccaatgtct |
42772143 |
T |
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| Q |
201 |
tcttcatccattggtcataccttattgttacttctcctttgctt |
244 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42772142 |
tcttcatccattgatcataccttattgttacttctcctttgctt |
42772099 |
T |
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