View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_31 (Length: 239)
Name: NF18593_low_31
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_31 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 54819421 - 54819183
Alignment:
| Q |
1 |
atcaggctgaagaagtgttaatttcaagtcataaataatatggatcaatttagtttggatatatttgtaaattgtaatgcgtgtattggtttgttctgta |
100 |
Q |
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| T |
54819421 |
atcaggctgaagaagtgttaatttcaagtcataaataatatggatcaatttagttgggatatatttgtaaattgtaatgcgtgtattggtttgttctgta |
54819322 |
T |
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| Q |
101 |
aacaaactatacataagttggtatttgatactcaaattgtgtaaggagttgttaacttattgttggtgagaatcaatgtttgatattctactccaaagat |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54819321 |
aacaaactatagataagttggtatttgatactcaaattgtgtaaggagttgttaacttattgttggtgagaatcaatgtttgatattctactccaaagat |
54819222 |
T |
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| Q |
201 |
tagttgtttacttttcctttttcgttgttgaatatctct |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
54819221 |
tagttgtttacttttcctttttcgttgttgaatatctct |
54819183 |
T |
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