View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18593_low_33 (Length: 233)

Name: NF18593_low_33
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18593_low_33
NF18593_low_33
[»] chr3 (8 HSPs)
chr3 (1-233)||(988794-989026)
chr3 (34-86)||(1891515-1891567)
chr3 (30-88)||(955921-955979)
chr3 (40-86)||(1004028-1004074)
chr3 (40-86)||(1022025-1022071)
chr3 (37-82)||(1941027-1941072)
chr3 (29-82)||(2697190-2697243)
chr3 (37-86)||(2931466-2931515)
[»] chr8 (2 HSPs)
chr8 (34-86)||(31144847-31144899)
chr8 (37-86)||(19727414-19727463)
[»] chr5 (5 HSPs)
chr5 (41-85)||(23754491-23754535)
chr5 (41-85)||(23774525-23774569)
chr5 (41-85)||(23819946-23819990)
chr5 (41-85)||(23861478-23861522)
chr5 (58-86)||(23691511-23691539)
[»] chr4 (1 HSPs)
chr4 (44-88)||(20020248-20020292)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 989026 - 988794
Alignment:
Q  1 catcctcataacttgcctttgttttttcggctcttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaacaataatggagttt 100  Q
    |||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  989026 catcctcataacgtgcttttgtttttttggctcttgaagaaggggcaattccttatcttttctaatggaagggttccacaatcgaacaataatggagttt 988927  T
Q  101 gaatcatcatcagcagcaagacagaggatgccattacacgagccaacgaagtaagcagaatggctgaaaggcaaataggattgagcgatgttggtagcgg 200  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  988926 gaatcatcagcagcagcaagacagaggatgccatcacacgagccaaggaagtaagcagaatggctgaaaggcaaataggattgagcgatgttggtagcgg 988827  T
Q  201 tgatggtgtctagtgggtaagactcgatgatga 233  Q
    |||||||||||||||||||||||||||||||||    
T  988826 tgatggtgtctagtgggtaagactcgatgatga 988794  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 1891515 - 1891567
Alignment:
Q  34 ttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 86  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  1891515 ttgaagagagggcaattccttaaattttctaatggaagggttccacaatcgaa 1891567  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 955979 - 955921
Alignment:
Q  30 gctcttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaaca 88  Q
    |||||| |||||||||||| |||||   ||||||||| |||||||| ||||||||||||    
T  955979 gctcttcaagagggggcaaatccttgaattttctaatagaagggttacacaatcgaaca 955921  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 1004074 - 1004028
Alignment:
Q  40 agggggcaattccttatcttttctaatggaagggttccacaatcgaa 86  Q
    |||||||||||||||   ||||||||||||||||||||||| |||||    
T  1004074 agggggcaattcctttaattttctaatggaagggttccacagtcgaa 1004028  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 1022071 - 1022025
Alignment:
Q  40 agggggcaattccttatcttttctaatggaagggttccacaatcgaa 86  Q
    |||||||||||||||   ||||||||||||||||||||||| |||||    
T  1022071 agggggcaattcctttaattttctaatggaagggttccacagtcgaa 1022025  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 1941027 - 1941072
Alignment:
Q  37 aagagggggcaattccttatcttttctaatggaagggttccacaat 82  Q
    ||||| ||||||||||||   |||||||||||||||||||||||||    
T  1941027 aagagagggcaattccttgaattttctaatggaagggttccacaat 1941072  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 2697190 - 2697243
Alignment:
Q  29 ggctcttgaagagggggcaattccttatcttttctaatggaagggttccacaat 82  Q
    |||| ||||| || |||||||||||||  ||||||||| |||||||||||||||    
T  2697190 ggcttttgaaaagagggcaattccttaaattttctaattgaagggttccacaat 2697243  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 2931515 - 2931466
Alignment:
Q  37 aagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 86  Q
    ||||| ||||||||||||   ||||| |||||||||||||||||||||||    
T  2931515 aagagagggcaattccttgaattttcgaatggaagggttccacaatcgaa 2931466  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 31144847 - 31144899
Alignment:
Q  34 ttgaagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 86  Q
    |||||||  ||||||||||||   |||||||||||||||||||||||||||||    
T  31144847 ttgaagatagggcaattccttgaattttctaatggaagggttccacaatcgaa 31144899  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 19727463 - 19727414
Alignment:
Q  37 aagagggggcaattccttatcttttctaatggaagggttccacaatcgaa 86  Q
    |||||||||||| |||||   |||||||| ||||||||||||||||||||    
T  19727463 aagagggggcaagtccttgaattttctaacggaagggttccacaatcgaa 19727414  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 23754491 - 23754535
Alignment:
Q  41 gggggcaattccttatcttttctaatggaagggttccacaatcga 85  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23754491 gggggcaattccttgaattttctaatggaagggttccacaatcga 23754535  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 23774525 - 23774569
Alignment:
Q  41 gggggcaattccttatcttttctaatggaagggttccacaatcga 85  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23774525 gggggcaattccttgaattttctaatggaagggttccacaatcga 23774569  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 23819946 - 23819990
Alignment:
Q  41 gggggcaattccttatcttttctaatggaagggttccacaatcga 85  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23819946 gggggcaattccttgaattttctaatggaagggttccacaatcga 23819990  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 23861478 - 23861522
Alignment:
Q  41 gggggcaattccttatcttttctaatggaagggttccacaatcga 85  Q
    ||||||||||||||   ||||||||||||||||||||||||||||    
T  23861478 gggggcaattccttgaattttctaatggaagggttccacaatcga 23861522  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 23691539 - 23691511
Alignment:
Q  58 ttttctaatggaagggttccacaatcgaa 86  Q
    |||||||||||||||||||||||||||||    
T  23691539 ttttctaatggaagggttccacaatcgaa 23691511  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 20020248 - 20020292
Alignment:
Q  44 ggcaattccttatcttttctaatggaagggttccacaatcgaaca 88  Q
    |||||||||||   ||||||||||||||||||||||||| |||||    
T  20020248 ggcaattccttgaattttctaatggaagggttccacaatagaaca 20020292  T

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