View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18593_low_34 (Length: 231)
Name: NF18593_low_34
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_34 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 24923449 - 24923644
Alignment:
| Q |
18 |
cttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatg |
117 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
24923449 |
cttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatg |
24923548 |
T |
|
| Q |
118 |
taactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc |
213 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24923549 |
tcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc |
24923644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 24982239 - 24982044
Alignment:
| Q |
18 |
cttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatg |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
24982239 |
cttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatg |
24982140 |
T |
|
| Q |
118 |
taactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc |
213 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24982139 |
taactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttc |
24982044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 24919877 - 24920070
Alignment:
| Q |
20 |
tcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgta |
119 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24919877 |
tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtc |
24919976 |
T |
|
| Q |
120 |
actgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc |
213 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
24919977 |
acagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttc |
24920070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 25085231 - 25085036
Alignment:
| Q |
18 |
cttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatg |
117 |
Q |
| |
|
|||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25085231 |
cttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatg |
25085132 |
T |
|
| Q |
118 |
taactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc |
213 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
25085131 |
taactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttc |
25085036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 24497250 - 24497443
Alignment:
| Q |
20 |
tcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgta |
119 |
Q |
| |
|
|||||| || || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24497250 |
tcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgta |
24497349 |
T |
|
| Q |
120 |
actgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc |
213 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24497350 |
actgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctcttc |
24497443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 31825548 - 31825741
Alignment:
| Q |
20 |
tcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgta |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||| |
|
|
| T |
31825548 |
tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtg |
31825647 |
T |
|
| Q |
120 |
actgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc |
213 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
31825648 |
accgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacctcttc |
31825741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 21584586 - 21584781
Alignment:
| Q |
18 |
cttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatg |
117 |
Q |
| |
|
|||||||| ||||||||||| || |||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| || ||||||||||| | |
|
|
| T |
21584586 |
cttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacg |
21584685 |
T |
|
| Q |
118 |
taactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc |
213 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||| | || ||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21584686 |
taaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttc |
21584781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 10575580 - 10575385
Alignment:
| Q |
18 |
cttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatg |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||| | || || ||||||||||| || |||||||| |||||||| || ||||||||||| | |
|
|
| T |
10575580 |
cttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaag |
10575481 |
T |
|
| Q |
118 |
taactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc |
213 |
Q |
| |
|
|||| ||||| | || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||||| |
|
|
| T |
10575480 |
taacagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttc |
10575385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 39954838 - 39955024
Alignment:
| Q |
22 |
aaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaac |
121 |
Q |
| |
|
|||||||||| || ||||| || |||||||||||||| | |||||| |||||||||||||| || ||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
39954838 |
aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac |
39954937 |
T |
|
| Q |
122 |
tgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc |
208 |
Q |
| |
|
||||||||||| |||||||| | |||||||| | ||||| | || ||||| ||||| | ||| ||||||||||| |||||||| |
|
|
| T |
39954938 |
agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccacc |
39955024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 213
Target Start/End: Complemental strand, 354547 - 354402
Alignment:
| Q |
69 |
acaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctgg |
168 |
Q |
| |
|
||||||||||| || |||| |||||||||||| || ||||||||||| ||||| ||||||| ||| |||||| |||||| |||||||| || ||||| |
|
|
| T |
354547 |
acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta |
354448 |
T |
|
| Q |
169 |
tttcttcataga-tcaaaccactgattctcttaacaccacctcttc |
213 |
Q |
| |
|
|||| ||||||| | ||||||||||| ||||| ||||||||||||| |
|
|
| T |
354447 |
tttcctcatagattaaaaccactgatcctcttcacaccacctcttc |
354402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 10580893 - 10580785
Alignment:
| Q |
105 |
tgctcagtgtatgtaactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacac |
204 |
Q |
| |
|
||||||||||| ||||| |||||| |||| ||||| |||||| |||||||| | ||||| |||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
10580893 |
tgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctcttatttcctcatagatcaaaccactgatcctcttcacac |
10580794 |
T |
|
| Q |
205 |
cacctcttc |
213 |
Q |
| |
|
|| |||||| |
|
|
| T |
10580793 |
caactcttc |
10580785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 41027753 - 41027596
Alignment:
| Q |
30 |
aatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac |
129 |
Q |
| |
|
|||||||| || || ||||| || |||||||| ||||| ||||||||||| || || |||||||| |||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
41027753 |
aatccataaagagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcac |
41027654 |
T |
|
| Q |
130 |
gaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaacc |
187 |
Q |
| |
|
|||| ||||||||||| ||||||||||| || || | || ||||| ||||||||||| |
|
|
| T |
41027653 |
gaataacattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaacc |
41027596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 14261021 - 14261216
Alignment:
| Q |
18 |
cttcaaccaccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatg |
117 |
Q |
| |
|
|||||||| ||||| ||||| | || ||||| || |||||||| ||||| ||||||||||| || || || ||||||||||| || || ||||| || | |
|
|
| T |
14261021 |
cttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacg |
14261120 |
T |
|
| Q |
118 |
taactgcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttc |
213 |
Q |
| |
|
|||| ||||| | || |||||||||||||| |||||||| ||||| | ||||||||||| ||||| || ||||||||||| ||||| ||||||| |
|
|
| T |
14261121 |
taacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttc |
14261216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 22898734 - 22898571
Alignment:
| Q |
30 |
aatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac |
129 |
Q |
| |
|
||||| || |||||||||||||| ||||| | ||||| || |||||||| || || || |||||||| ||||||||||||||||| || || ||||| | |
|
|
| T |
22898734 |
aatccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctc |
22898635 |
T |
|
| Q |
130 |
gaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat |
193 |
Q |
| |
|
||| ||||||||||| || |||||||| || || | || || ||||| |||||||||||||| |
|
|
| T |
22898634 |
taatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat |
22898571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 22950402 - 22950239
Alignment:
| Q |
30 |
aatccatagagggttcttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcac |
129 |
Q |
| |
|
||||| || |||||||||||||| ||||| | ||||| || |||||||| || || || |||||||| ||||||||||||||||| || || ||||| | |
|
|
| T |
22950402 |
aatccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctc |
22950303 |
T |
|
| Q |
130 |
gaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgat |
193 |
Q |
| |
|
||| ||||||||||| || |||||||| || || | || || ||||| |||||||||||||| |
|
|
| T |
22950302 |
taatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat |
22950239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 53328880 - 53328717
Alignment:
| Q |
45 |
cttccctgcctcttcaaagcatagacaacatccatggctgtcacagtcttcctcctagcgtgctcagtgtatgtaactgcatcacgaatgacattctcca |
144 |
Q |
| |
|
|||||||||||||| | ||| || ||||||||||| || || |||||||| | | ||| ||||| |||||||| || ||||||||||| |||||||| | |
|
|
| T |
53328880 |
cttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgacagcatcacgaatcacattctcaa |
53328781 |
T |
|
| Q |
145 |
agaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacc |
208 |
Q |
| |
|
|||||||| | || || | |||||||||||||| || |||||||| | ||| |||||||| |
|
|
| T |
53328780 |
gaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc |
53328717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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