View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_35 (Length: 221)
Name: NF18593_low_35
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 37442964 - 37443155
Alignment:
| Q |
12 |
tgagatgaattgtgcaccatggttctgctaaaaacttttcaacctacatcaacacttttaatcatgaagctaagaatcaaatgtcctcgccgtctagtct |
111 |
Q |
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| T |
37442964 |
tgagatgaattgtgcaccatggttctgctaaaaacttttcaacctacatcaacacttttaatcatgaagctaaaaatcaaatgtcctcgccgtctagtct |
37443063 |
T |
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| Q |
112 |
tgtatattaatttctctatcgtgattatgattcaggccccattattattccagccacatatccaatatagatgtagggtgggagtaaaaatg |
203 |
Q |
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| T |
37443064 |
tgtatattaatttctctatcgtaattatgattcaggccccattattattccagccacatatccaatatagatgtagggtgggagtaaaaatg |
37443155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 34941322 - 34941424
Alignment:
| Q |
47 |
ttttcaacctacatcaacacttttaatcatgaagctaagaatcaaatgtcctc-gccgtctagtcttgtatattaatttctctatcgtgattatgattca |
145 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| ||| | |||||||||||| | |
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| T |
34941322 |
ttttcaacctacatcaacacttttaatcatgaagctaagaatcaaatgtcctcagcagtctagtc----gtattaatttttctttggtgattatgattta |
34941417 |
T |
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| Q |
146 |
ggcccca |
152 |
Q |
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| T |
34941418 |
ggcccca |
34941424 |
T |
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