View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_38 (Length: 217)
Name: NF18593_low_38
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 48475426 - 48475624
Alignment:
| Q |
1 |
acgattctcaacaaaaatcacacaacatcaaactcaataaagcttcaattttgattgtttaaataaaaagtattagctattttgattgttaatatgacaa |
100 |
Q |
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| T |
48475426 |
acgattctcaaccaaaatcacacaacatcaaactcaataaagcttcaattttgattgtttgaataaaaagtattagctattttgattgttaatatgacaa |
48475525 |
T |
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| Q |
101 |
tttattctgtttgtatatatttacggtgtgagcaagacatgttcaaaagagtggtattttagataatttagctcccttcaatccaaatcaagaatatac |
199 |
Q |
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| T |
48475526 |
tttattctgtttgtatatatttacggtgtgagcaagacatgttcaaaagagtggtattttagataatttagctcccttcaatccaaatcaagaatatac |
48475624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 14123976 - 14124008
Alignment:
| Q |
165 |
aatttagctcccttcaatccaaatcaagaatat |
197 |
Q |
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| T |
14123976 |
aatttagctcccttcaatccaaatcaaaaatat |
14124008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 24345167 - 24345195
Alignment:
| Q |
169 |
tagctcccttcaatccaaatcaagaatat |
197 |
Q |
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| T |
24345167 |
tagctcccttcaatccaaatcaagaatat |
24345195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 194
Target Start/End: Complemental strand, 8532316 - 8532287
Alignment:
| Q |
165 |
aatttagctcccttcaatccaaatcaagaa |
194 |
Q |
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| T |
8532316 |
aatttagctcccttcaatccaaatcaagaa |
8532287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 35051016 - 35051048
Alignment:
| Q |
165 |
aatttagctcccttcaatccaaatcaagaatat |
197 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
35051016 |
aatttagctcccttcaatccaaatcaaaaatat |
35051048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 20006390 - 20006358
Alignment:
| Q |
165 |
aatttagctcccttcaatccaaatcaagaatat |
197 |
Q |
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||||||||||||||||||||||||||| ||||| |
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|
| T |
20006390 |
aatttagctcccttcaatccaaatcaaaaatat |
20006358 |
T |
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