View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_5 (Length: 510)
Name: NF18593_low_5
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Original strand, 41554901 - 41555372
Alignment:
| Q |
18 |
taaattcaattagctagctttgtatatatgtaaa-tactccatgtaccttgtatatatgattgatacttctaactattcagttcgttgagtaagcaagta |
116 |
Q |
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| T |
41554901 |
taaattcaatcagctagctt-gtatatatgtaaactactccatgtgccttgtatatatgattaatacttctaactattcagttcgttgagtaagcaagta |
41554999 |
T |
|
| Q |
117 |
gcactgctgattaatataagtatcggagtccgactcctctcaagtgaaaagtgagcatattaattaataactcaaagtagatgttatagataccttataa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
41555000 |
gcactgctgattaatataagtatcggagtccgactcctctcaagtgtaaagtgagcaaattaattaataactcgaagtagatattatagataccttataa |
41555099 |
T |
|
| Q |
217 |
caaaccatgagattgtcaaaataattttctcattttacactataatcacagtagccgatccaaatcctaggaattaatagggacctcgttttttatttca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41555100 |
caaaccatgagattgtcaaaataattttctcattttacactataatcacagtagccgatccaaatcctaggaattaatagggacctcgttttttatttca |
41555199 |
T |
|
| Q |
317 |
ccaacataactgnnnnnnnnnnnnnnnnnngacatctctcaacttcaaaggataagataaatgtgacaaatacagtggtaaaatatcttggtggtacgtc |
416 |
Q |
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|||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41555200 |
ccaacataactg-ttttttctgtcttttttgacatctctgaacttcaaaggttaagataaatgtgacaaatacagtggtaaaatatcttggtggtacgtc |
41555298 |
T |
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| Q |
417 |
catggtggggagggggttaaactgcaaaagaaatgatacaatatagtaatatatttcattaagcttcaatttgtggcct |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41555299 |
catggtggggagggggttaaactgcaaaagaaatgatacaatatag-----tatttcattaagcttcaatttgtggcct |
41555372 |
T |
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