View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_6 (Length: 490)
Name: NF18593_low_6
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 22 - 482
Target Start/End: Original strand, 3152146 - 3152611
Alignment:
| Q |
22 |
acatgcttcgagatataacaagagcgcataaattatctccttcggaaacagtgaaatacataaaatgaatagagtacccacccttgcaaaaagctccttc |
121 |
Q |
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| T |
3152146 |
acatgcttcgagatataacaagagcgcataaattctctccttcggaaacagtgaaatacataaaatgaatagagtacccacccttgcaaaaagctccttc |
3152245 |
T |
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| Q |
122 |
accaaagtccttagagatgtatagtgttttttagtatcctcatccctacacctctgcagctgacggaacaaacatatggaggtaccaagacaagaaaaca |
221 |
Q |
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| T |
3152246 |
accaaagtccttagagatgtatagtgttttttagtatccacatccctacacctctgcagctgacggaacaaacatatggaggtaccaagacaagaaaaca |
3152345 |
T |
|
| Q |
222 |
aataaaaacacacataataaacgagaggagtgtgagagtaattgaatttatttcat-----tgacaactctatggagtttggttatgtttccatgattac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3152346 |
aataaaaacacacataataaacgagaggagtgtgagagtaattgaatttatttcattgacatgacaactctatggagtttggttatgtttccatgattac |
3152445 |
T |
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| Q |
317 |
tactgaattaattaggctaagtcataccttattaatggtattgcggatgcacaattatgttagctctggagtctggaagcttgatactagtgatttccta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3152446 |
tactgaattaattaggctaagtcataccttattaatggtattgcggatgcacaattatgttagctctggagtctggaagcttgatactagtgatttccta |
3152545 |
T |
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| Q |
417 |
taatttgtgaactttgtggaatatggttttgtttttcatgcttcttacttggtgtctacctttgct |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3152546 |
taatttgtgaactttgtggaatatggttttgtttttcatgcttcttacttggtgtctacctttgct |
3152611 |
T |
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