View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_7 (Length: 484)
Name: NF18593_low_7
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 181 - 475
Target Start/End: Complemental strand, 11880721 - 11880426
Alignment:
| Q |
181 |
tgcattatgtctaaactcattactctaaagaagttaaatcctaagtaatgtaatgtaccttggagatgtttcttgttgtgagactttgcaggatactccc |
280 |
Q |
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|||||||| ||||||| |||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| | || |
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| T |
11880721 |
tgcattatctctaaacacattactctaaagaggtccggtcctaagaaatgtaatgtacctttgagatgtttcttgttatgagactttgcaggataattcc |
11880622 |
T |
|
| Q |
281 |
agtcatagcatctgaagctgtagactttaccgactaccctcacaatcaatgcgtggtggtagggatgtgggtgaggatatgcaacgggtggaggaggaga |
380 |
Q |
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| T |
11880621 |
aatcataacatctgaagctgtagactttaccgactaccctcacaataagtgagtggtggtagggatatgggtgaggatacacaacaggtggaggaggaga |
11880522 |
T |
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| Q |
381 |
gttgtaatagtatggtggaggaagaaccttgggtggtggtggggacttgtagtagtaaggtgtgt-gggaataggagatggagggggaggagattt |
475 |
Q |
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||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
11880521 |
attgtaatagtatggtggtggaaggacctttggtggtggtggggacttgtagtagtaaggtgtgtggggaataggagacggagggggaggagattt |
11880426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 181 - 475
Target Start/End: Complemental strand, 11903221 - 11902926
Alignment:
| Q |
181 |
tgcattatgtctaaactcattactctaaagaagttaaatcctaagtaatgtaatgtaccttggagatgtttcttgttgtgagactttgcaggatactccc |
280 |
Q |
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|||||||| ||||||| |||||||||||||| || ||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| | || |
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| T |
11903221 |
tgcattatctctaaacacattactctaaagaggtccggtcctaagaaatgtaatgtacctttgagatgtttcttgttatgagactttgcaggataattcc |
11903122 |
T |
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| Q |
281 |
agtcatagcatctgaagctgtagactttaccgactaccctcacaatcaatgcgtggtggtagggatgtgggtgaggatatgcaacgggtggaggaggaga |
380 |
Q |
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| T |
11903121 |
aatcataacatctgaagctgtagactttaccgactaccctcacaataagtgagtggtggtagggatatgggtgaggatacacaacaggtggaggaggaga |
11903022 |
T |
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| Q |
381 |
gttgtaatagtatggtggaggaagaaccttgggtggtggtggggacttgtagtagtaaggtgtgt-gggaataggagatggagggggaggagattt |
475 |
Q |
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||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
11903021 |
attgtaatagtatggtggtggaaggacctttggtggtggtggggacttgtagtagtaaggtgtgtggggaataggagacggagggggaggagattt |
11902926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 225 - 475
Target Start/End: Complemental strand, 11890133 - 11889882
Alignment:
| Q |
225 |
gtaatgtaatgtaccttggagatgtttcttgttgtgagactttgcaggatactcccagtcatagcatctgaagctgtagactttaccgactaccctcaca |
324 |
Q |
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||||||| ||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||| |
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| T |
11890133 |
gtaatgtgatgtacctttgaggtgtttcttgttatgagacttttcaggatactcccagtcataacatctgaagctgtagacgttacccactaccttcacg |
11890034 |
T |
|
| Q |
325 |
atcaatgcgtggtggtagggatgtgggtgaggatatgcaacgggtggaggaggagagttgtaatagtatggtggaggaagaaccttgggtggtggtgggg |
424 |
Q |
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| T |
11890033 |
atcaatgcatggtggtagggatgagggtgatgatacacaacaggtggaggaggagagttgtaatagtatggtggtggaagaaccttaggtggtggtgggg |
11889934 |
T |
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| Q |
425 |
acttgtagtagtaaggtgtgt-gggaataggagatggagggggaggagattt |
475 |
Q |
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||||||||||||||||||| | ||||||||| |||||||| ||||| ||||| |
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| T |
11889933 |
acttgtagtagtaaggtgtatggggaataggtgatggaggaggaggtgattt |
11889882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 443
Target Start/End: Original strand, 52820658 - 52820868
Alignment:
| Q |
227 |
aatgtaatgtaccttggagatgtttcttgttgtgagactttgcaggatactcccagtcatagcatctgaagctgtagactttaccgactaccctcacaat |
326 |
Q |
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|||||||| |||||| |||||||||||||| ||||||||| ||||||||||||| | |||||| || |||||||||||||||| |||||| ||||||| |
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| T |
52820658 |
aatgtaatatacctttgagatgtttcttgtcatgagacttttcaggatactcccaattatagcacttgtagctgtagactttacccactaccttcacaat |
52820757 |
T |
|
| Q |
327 |
caatgcgtggtggtagggatgtgggtgaggatatgcaacgggtggaggaggagagttgtaatagtatggtggaggaagaaccttgggtggtggtggggac |
426 |
Q |
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||||| ||||||||| ||| ||| |||||| |||| || ||||||||||| || || |||||||| || ||| ||||||||||||||| ||| |
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| T |
52820758 |
caatgggtggtggtaagga---ggg---ggatatacaactggcggaggaggagaattatagtagtatggaggtggagtgtacttgggtggtggtggagac |
52820851 |
T |
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| Q |
427 |
ttgtagtagtaaggtgt |
443 |
Q |
| |
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| T |
52820852 |
tgatagtagtacggtgt |
52820868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 475
Target Start/End: Complemental strand, 11902747 - 11902638
Alignment:
| Q |
370 |
ggaggaggagagttgtaatagtatggtggaggaaga-accttg--ggtggtggtggggacttgtagtagtaaggtgtgtggg-aataggagatggagggg |
465 |
Q |
| |
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||||||||||| ||||||||||||||||| ||| || | || |||||||| || || ||||| ||||||||||| |||| ||||||||||||||| | |
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| T |
11902747 |
ggaggaggagatttgtaatagtatggtggtggaggagatggtgaaggtggtgggggagatttgtaatagtaaggtgtatggggaataggagatggaggag |
11902648 |
T |
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| Q |
466 |
gaggagattt |
475 |
Q |
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|||||||||| |
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| T |
11902647 |
gaggagattt |
11902638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 475
Target Start/End: Complemental strand, 11879947 - 11879898
Alignment:
| Q |
427 |
ttgtagtagtaaggtgtgt-gggaataggagatggagggggaggagattt |
475 |
Q |
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||||||||||||||||| | |||||||||||||||||| ||||||||||| |
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| T |
11879947 |
ttgtagtagtaaggtgttttgggaataggagatggaggaggaggagattt |
11879898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 475
Target Start/End: Complemental strand, 11880202 - 11880138
Alignment:
| Q |
412 |
ggtggtggtggggacttgtagtagtaaggtgtgtggg-aataggagatggagggggaggagattt |
475 |
Q |
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|||||||| || || ||||| ||||||||||| |||| ||||||||||||||| ||||||||||| |
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| T |
11880202 |
ggtggtgggggagatttgtaatagtaaggtgtatggggaataggagatggaggaggaggagattt |
11880138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 442
Target Start/End: Original strand, 52821418 - 52821449
Alignment:
| Q |
411 |
gggtggtggtggggacttgtagtagtaaggtg |
442 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
52821418 |
gggtggtggtggggacttgtagtagtaaggtg |
52821449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 475
Target Start/End: Complemental strand, 11880298 - 11880234
Alignment:
| Q |
412 |
ggtggtggtggggacttgtagtagtaaggtgtgtggg-aataggagatggagggggaggagattt |
475 |
Q |
| |
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|||||||| || || ||||| ||||||||||| ||| ||||||||||||||| ||||||||||| |
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| T |
11880298 |
ggtggtgggggagatttgtaatagtaaggtgtacggggaataggagatggaggaggaggagattt |
11880234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 475
Target Start/End: Complemental strand, 11902798 - 11902734
Alignment:
| Q |
412 |
ggtggtggtggggacttgtagtagtaaggtgtgtggg-aataggagatggagggggaggagattt |
475 |
Q |
| |
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|||||||| || || ||||| ||||||||||| ||| ||||||||||||||| ||||||||||| |
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| T |
11902798 |
ggtggtgggggagatttgtaatagtaaggtgtacggggaataggagatggaggaggaggagattt |
11902734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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