View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18593_low_9 (Length: 448)
Name: NF18593_low_9
Description: NF18593
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18593_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 39179534 - 39179949
Alignment:
| Q |
17 |
catttccatcatgatgctggacaagaaaaactatttggtcacttgtttggggatcaagcaaggttattagtttttctcacgagcttttgatgtatttaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179534 |
catttccatcatgatgctggacaagaaaaactatttggtcacttgtttggggatcaagcaaggttattagtttttctcacgagcttttgatgtatttaag |
39179633 |
T |
|
| Q |
117 |
gacaaggaaactgattttagaagcttagttttcactaccttatgttttaaactgaccattttacatttagctaacaaacaaaaatatgtcgaaaacaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179634 |
gacaaggaaactgattttagaagcttagttttcactaccttatgttttaaactgaccattttacatttagctaacaaacaaaaatatgtcgaaaacaaaa |
39179733 |
T |
|
| Q |
217 |
aggaatcggccggcttttttgtttcagttggtgttttacatttaacttacccaccaagttattattagatcttatcttatgaagttgacttgagattagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39179734 |
aggaatcggccggcttttttgtttcagttggtgttttacatttaacttacccaccaagttattattagatcttatcttatgaagctgacttgagattagc |
39179833 |
T |
|
| Q |
317 |
atagcagaaaaagtcttgtgcttacaaaggaaaaaacaatactcttagttaaatttgctttcagacctttcactgagtatatttatatatatgcttcaat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39179834 |
atagcagaaaaagtcttgtgcttacaaaggaaaaaacaatactctgagttaaatttgctttcagacctttcactgagtatatttatatatatgcttcaat |
39179933 |
T |
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| Q |
417 |
ccctttctagtcactg |
432 |
Q |
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| T |
39179934 |
ccctttctagtcactg |
39179949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 243 - 432
Target Start/End: Original strand, 39221217 - 39221401
Alignment:
| Q |
243 |
gttggtgttttacatttaacttacccaccaagttattattagatcttatcttatgaagttgacttgagattagcatagcagaaaaagtcttgtgcttaca |
342 |
Q |
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| T |
39221217 |
gttggtgttttacatttaacttatccaccaagttattattagatct-----tatgaagctgacttgagattagcatagcagaaaaagtcttgtgcttatg |
39221311 |
T |
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| Q |
343 |
aaggaaaaaacaatactcttagttaaatttgctttcagacctttcactgagtatatttatatatatgcttcaatccctttctagtcactg |
432 |
Q |
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| T |
39221312 |
aaggaaaaaacaattttgttggttaaatttgctttcagacctttcactgagtatatttatatatatgcttcaatccctttctagtcactg |
39221401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 156
Target Start/End: Original strand, 39192129 - 39192272
Alignment:
| Q |
17 |
catttccatcatgatgctggacaagaaaaactatttggtcacttgtttggggatcaagcaaggttattagtttttctcacgagcttttgatgtattt--- |
113 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||||| |
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| T |
39192129 |
cattgccatcatgatgctggacaagaaaaactacttggtcacttgtttggcgatcaagcaaggttactaggttttctcatgagcttttgatgtatttaat |
39192228 |
T |
|
| Q |
114 |
-aaggacaaggaaactgattttagaagcttagttttcactacct |
156 |
Q |
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| T |
39192229 |
caaggaaaaggaaactgattttagaagcttagttatcactacct |
39192272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 39221033 - 39221131
Alignment:
| Q |
17 |
catttccatcatgatgctggacaagaaaaactatttggtcacttgtttggggatcaagcaaggttattagtttttctcacgagcttttgatgtatttaa |
115 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
39221033 |
cattgccatcatgatgctggacaagaaaaactacttggtcacttgtgtggggatcaagcaaggttactagtttttctcatgagcttttgatgtatttaa |
39221131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 357
Target Start/End: Original strand, 39192404 - 39192513
Alignment:
| Q |
243 |
gttggtgttttacatttaacttacccaccaagttattattagatcttatcttatgaagttgacttgagattagcatagcagaaaaagtcttgtgcttaca |
342 |
Q |
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|||||||||||||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| | |||||||| |
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| T |
39192404 |
gttggtgttttacatttaacttactcatcaagttattattag-----atcttgtgaagcaaacttgagattagcatagcagaaaaagttatatgcttaca |
39192498 |
T |
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| Q |
343 |
aaggaaaaaacaata |
357 |
Q |
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|| |||||||||||| |
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| T |
39192499 |
aaagaaaaaacaata |
39192513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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