View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18594_high_7 (Length: 308)
Name: NF18594_high_7
Description: NF18594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18594_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 28279857 - 28279778
Alignment:
| Q |
212 |
gcaaggacaccaaaatgagttcattgacgaagtatcatttaacgaccgtcttgaaggcttgtagttatggaagtttttac |
291 |
Q |
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| T |
28279857 |
gcaaggacaagaaaatgagttcattgatgaattatcaattaacgaccgtcttgaaggcttgtagttatggaagtttttac |
28279778 |
T |
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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 28279955 - 28279875
Alignment:
| Q |
29 |
caaataatatacttacagagactaaaagcaaataataatatatattttacaaaca--ctattttcaaattcaaacctcaaa |
107 |
Q |
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| T |
28279955 |
caaataatatatttacagagaccgaaagcaaataataatatatattttacaaacactctattttcaaattcaaacttcaaa |
28279875 |
T |
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