View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18594_low_1 (Length: 647)
Name: NF18594_low_1
Description: NF18594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18594_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 7562822 - 7563312
Alignment:
| Q |
1 |
caaacaaaccatcaccaccatcccccaatggatccggaaattcaccaactccggtagcgggacgtcctccaccagcctccaatagatccggaaattcaca |
100 |
Q |
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| T |
7562822 |
caaacaaaccatccccaccatcccccaatggatccggaaattcaccaactccggtagcgggacgtcctccaccagcctccaatagatctggaaattcaca |
7562921 |
T |
|
| Q |
101 |
atcacctccacacaaatcaccaactacgccaactggacactcaaatggtaatcacaa---caataacaataacaataacaatgatgatgccactaaggca |
197 |
Q |
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| T |
7562922 |
atcacctccacacaaatcaccaactacgccaactggacactcaaatggtaatcacaacaacaataacaataacaataacaatgatgatgccactaaggca |
7563021 |
T |
|
| Q |
198 |
atagttggagtagtgattggggtggcagttgctcttatcattttggtcatcgcttgctttgtctgctgcaggaagaagaaaagaaagtactattatggag |
297 |
Q |
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| T |
7563022 |
atagttggagtagtgattggggtggcagttgctcttatcattttggtcatcgcttgctttgtctgctgcaggaagaagaaaagaaagtactattatggag |
7563121 |
T |
|
| Q |
298 |
aacgcccacctcctggaaaaggtgccaaaatcacaaccttcgtaatttttctttatatataggtgtcatgtatatatttattattaattgaagtggcact |
397 |
Q |
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| T |
7563122 |
aacgcccacctcctggaaaaggtgccaaaatcataattttcgtaatttttctttatatataggtgtcatgtatatatttattattaattgaagtggcact |
7563221 |
T |
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| Q |
398 |
gccatttcacaacctcccttgggagaattgaactatgccccttgagattacaagtcaaacttttaccattgaatttataatacacacccaa |
488 |
Q |
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| T |
7563222 |
gccatttcacaacctcccttgggagaattgaactacgccccttgagattacaagtcaaacttttaccattgaacttataatacacacccaa |
7563312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 502 - 626
Target Start/End: Original strand, 7563366 - 7563490
Alignment:
| Q |
502 |
tcttctactgttaacatttcaatatataatgcagggaatagcaactattacactagtgggcatcactcaaattactatggagatcgggaacatgttgtta |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7563366 |
tcttctactgttaacatttcaatatataatgcagggaatagtaactattacactagtgggcatcactcaaattactatggagatcgggaacatgttgtta |
7563465 |
T |
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| Q |
602 |
gggttcaaaatggaatggttccaaa |
626 |
Q |
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| T |
7563466 |
gggttcaaaatggaatgggtccaaa |
7563490 |
T |
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