View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18594_low_11 (Length: 234)
Name: NF18594_low_11
Description: NF18594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18594_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 10141354 - 10141146
Alignment:
| Q |
13 |
aaaatggtcattgaagctcttcatgaccttcctacagatataaagaaaaacaacaaagatgcccttcctggaagtggttaccttgcaccaagtgctttta |
112 |
Q |
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| T |
10141354 |
aaaatggtcattgaagctcttcatgaccttcctatagatataaagaaaaacaacaaagatgccattcctggaagtggttaccttgcaccaagtgctttta |
10141255 |
T |
|
| Q |
113 |
accctctcttacaatctttcggcctctatgatatggggtcttcacaagccatgcatgatttctgctctcaactgaatgctacaccttatcagaggtatgt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10141254 |
accctctcttacaatctttcggcctctatgatatgggttcttcacaagccatgcatgatttctgctctcaactgaatgctacaccttaccagaggtatgt |
10141155 |
T |
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| Q |
213 |
ttatgttta |
221 |
Q |
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||||||||| |
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| T |
10141154 |
ttatgttta |
10141146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 10089718 - 10089510
Alignment:
| Q |
13 |
aaaatggtcattgaagctcttcatgaccttcctacagatataaagaaaaacaacaaagatgcccttcctggaagtggttaccttgcaccaagtgctttta |
112 |
Q |
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|||||||| ||| ||||||||| |||||||||| ||||| ||||||||||| ||||||| | ||||||||||||||||| ||| |||||||| ||||| |
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| T |
10089718 |
aaaatggttgttgtagctcttcacgaccttcctatggatatcaagaaaaacaataaagatgtcattcctggaagtggttactttggaccaagtgttttta |
10089619 |
T |
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| Q |
113 |
accctctcttacaatctttcggcctctatgatatggggtcttcacaagccatgcatgatttctgctctcaactgaatgctacaccttatcagaggtatgt |
212 |
Q |
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| T |
10089618 |
accctctcatagaatctgtcggcctctatgatatgggttcttcgcaagctatacaagatttctgctctcaattgaatgctacacctcatcagaggtatgc |
10089519 |
T |
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| Q |
213 |
ttatgttta |
221 |
Q |
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||| ||||| |
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| T |
10089518 |
ttaggttta |
10089510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 10146356 - 10146168
Alignment:
| Q |
23 |
ttgaagctcttcatgaccttcctacagatataaagaaaaacaacaaagatgcccttcctggaagtggttaccttgcaccaagtgcttttaaccctctctt |
122 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||| | || ||||||| |||||| |||||||||||||||| ||||| || || |
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| T |
10146356 |
ttgaagctcttcatgaccttcctatggatatcaagaaaaacaacaaagatgtcatttctggaaggggttactttgcaccaagtgctttaaacccactatt |
10146257 |
T |
|
| Q |
123 |
acaatctttcggcctctatgatatggggtcttcacaagccatgcatgatttctgctctcaactgaatgctacaccttatcagaggtatg |
211 |
Q |
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| ||||||||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||||| |||||| | |||||||||| |
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| T |
10146256 |
agaatctttcggcctctatgacatggatgcttcataagctatgcatgatttctgctctcaactgaatgtcacacctcaccagaggtatg |
10146168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 211
Target Start/End: Original strand, 11301038 - 11301222
Alignment:
| Q |
27 |
agctcttcatgaccttcctacagatataaagaaaaacaacaaagatgcccttcctggaagtggttaccttgcaccaagtgcttttaaccctctcttacaa |
126 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||||| ||||||| | ||||||||||||||||| ||| ||||| || |||||||||| || || || |
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| T |
11301038 |
agctcttcatgaccttcctatggataggaagaaaaacaataaagatgtcattcctggaagtggttactttggaccaactgtttttaaccctgtcatagaa |
11301137 |
T |
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| Q |
127 |
tctttcggcctctatgatatggggtcttcacaagccatgcatgatttctgctctcaactgaatgctacaccttatcagaggtatg |
211 |
Q |
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||| | ||||||||||||||||| ||||||||||| || || |||||||||||||| |||||||||||||| |||||||||||| |
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| T |
11301138 |
tctcttggcctctatgatatgggttcttcacaagctatacaatatttctgctctcaattgaatgctacacctcatcagaggtatg |
11301222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 10152962 - 10152780
Alignment:
| Q |
26 |
aagctcttcatgaccttcctacagatataaagaaaaacaacaaagatgcccttcctggaagtggttaccttgcaccaagtgcttttaaccctctcttaca |
125 |
Q |
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||||||||| ||| ||||||| ||||| ||||||||||||||||||| | || |||| ||||||||| | |||||||||||| | || ||||||| | |
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| T |
10152962 |
aagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaagtgctgtcaatcctctctatga |
10152863 |
T |
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| Q |
126 |
atctttcggcctctatgatatggggtcttcacaagccatgcatgatttctgctctcaactgaatgctacaccttatcagaggt |
208 |
Q |
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| |||| |||||||||||| | || ||||||||||| ||||||| |||||||||||| ||||||| |||||| |||| |||| |
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| T |
10152862 |
agctttaggcctctatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacacctcatcaaaggt |
10152780 |
T |
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