View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18594_low_13 (Length: 201)
Name: NF18594_low_13
Description: NF18594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18594_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 3e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 32654410 - 32654242
Alignment:
| Q |
18 |
tggaccgtctatcatcttgtagtatctatttttctcttataggcaagccagtcaaacttgtgttttatatactttgggattgccattttta--------- |
108 |
Q |
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| T |
32654410 |
tggaccgtctatcatcttgtagtatctatttttctcttataggcaaggcagtcaaacttgtgttttatatactttgggattgccatttttatgatttttt |
32654311 |
T |
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| Q |
109 |
tgctgagattccgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctctctactttttgtg |
177 |
Q |
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| T |
32654310 |
tgcttagattacgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctctctattttttgtg |
32654242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 36191968 - 36191798
Alignment:
| Q |
18 |
tggaccgtctatcatcttgtagtatctatttttctcttataggcaagccagtcaaacttgtgttttatatactttgggattgccatttttatgct----- |
112 |
Q |
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| T |
36191968 |
tggactgtgtatcatcttgtagtgtccatttttctcttataggcaaggcagttaaacttgtgttttatatactttggaattgccatttttatgatttttt |
36191869 |
T |
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| Q |
113 |
------gagattccgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctctctactttttgtg |
177 |
Q |
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| T |
36191868 |
tgctgagagattccgaaccagtggaatcgctgtgaaaatttaaaatcagagaattctctctattttttgtg |
36191798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 164
Target Start/End: Original strand, 5055509 - 5055631
Alignment:
| Q |
53 |
cttataggcaagccagtcaaacttgtgttttatatactttgggattgccatttttatgct-----------gagattccgaaccagtggaatcgctgtga |
141 |
Q |
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| T |
5055509 |
cttataggcatggcagtcaaacttgtgttttatatactttggaattgccatttttatgattgttttgctgagagattccaaacctgtggaatcgctgtga |
5055608 |
T |
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| Q |
142 |
aaatttaaaatcagagaattctc |
164 |
Q |
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| T |
5055609 |
aaatttaaaatcctagaattctc |
5055631 |
T |
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