View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18594_low_2 (Length: 617)

Name: NF18594_low_2
Description: NF18594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18594_low_2
NF18594_low_2
[»] chr1 (6 HSPs)
chr1 (54-608)||(43084616-43085170)
chr1 (370-496)||(43046309-43046434)
chr1 (149-237)||(43046669-43046755)
chr1 (509-553)||(43076339-43076383)
chr1 (514-564)||(3301432-3301482)
chr1 (146-215)||(43085389-43085456)
[»] chr8 (3 HSPs)
chr8 (378-480)||(1895540-1895642)
chr8 (383-454)||(33306144-33306215)
chr8 (385-454)||(41139238-41139307)
[»] chr4 (2 HSPs)
chr4 (383-454)||(25371638-25371709)
chr4 (385-454)||(33870914-33870983)
[»] chr7 (3 HSPs)
chr7 (385-454)||(22365596-22365665)
chr7 (385-454)||(22361910-22361979)
chr7 (385-445)||(11474873-11474933)
[»] chr5 (2 HSPs)
chr5 (385-454)||(2639503-2639572)
chr5 (384-445)||(9749223-9749284)
[»] chr2 (1 HSPs)
chr2 (385-454)||(42358124-42358193)
[»] scaffold0128 (1 HSPs)
scaffold0128 (388-454)||(45531-45597)


Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 54 - 608
Target Start/End: Complemental strand, 43085170 - 43084616
Alignment:
Q  54 tttttgattctgcagaaacatcttatttcatgcccagtatatattctgttattgacatggtgacagaactttgttcttgtattttatttatctattttat 153  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  43085170 ttttggattctgcagaaacatcttatttcatgcccactatatattctgttattgacatggtgacagaacgttgttcttgtatttcatttatctattttat 43085071  T
Q  154 tgttgattacttaggtttgtttaacctgttttatctgctgaaatatctgattgcatgtctgactaatagaaataagattagaatacacacaagttccttg 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43085070 tgttgattacttaggtttgtttaacctgttttatctgctgaaatatctgattgcatgtctgactaatagaaataagattagaatacacacaagttccttg 43084971  T
Q  254 ttcaggaactgactcaacgtagcccttttaacctagtggtggagccccctttttccttagcatgctgatgttaattattgtcatattgttgattatgtat 353  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43084970 ttcaggaactgactcaatgtagcccttttaacccagtggtggagccccctttttccttatcatgctgatgttaattattgtcatattgttgattatgtat 43084871  T
Q  354 ttcatttttggtctgagttcatagacaatttgcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgagg 453  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43084870 ttcatttttggtctgagttcatagacaatttgcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgagg 43084771  T
Q  454 gtaattcatttcattttgttgccaagtccacttagtgggataagacttgctgtcattgtatttgggttcatacttatgtattgttttctttgttgaattg 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43084770 gtaattcatttcattttgttgccaagtccacttagtgggataagacttgctgtcattgtctttgggttcatacttatgtattgttttctttgttgaattg 43084671  T
Q  554 ttagatcttttttgatagtgtgttgttgatagcagtattcctttattattttctt 608  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43084670 ttagatcttttttgatagtgtgttgttgatagcagtattcctttattattttctt 43084616  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 370 - 496
Target Start/End: Complemental strand, 43046434 - 43046309
Alignment:
Q  370 gttcatagacaatttgcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgagggtaattcatttcattt 469  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||| |||||||||||| |    
T  43046434 gttcatatacaacttgcccttatagctcagtggtagagcatcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgagggcaattcatttcatat 43046335  T
Q  470 tgttgccaagtccacttagtgggataa 496  Q
     ||| ||||  ||||||||||||||||    
T  43046334 agtt-ccaaacccacttagtgggataa 43046309  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 43046755 - 43046669
Alignment:
Q  149 tttattgttgattacttaggtttgtttaacctgttttatctgctgaaatatctgattgcatgtctgactaatagaaataagattagaat 237  Q
    |||||| ||||||||| | |||||||| ||||||| |||||||||||  ||||||||||||| |||| ||||||  |||||||||||||    
T  43046755 tttattcttgattactgaagtttgttttacctgttatatctgctgaagaatctgattgcatgcctgattaatag--ataagattagaat 43046669  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 509 - 553
Target Start/End: Original strand, 43076339 - 43076383
Alignment:
Q  509 ttgtatttgggttcatacttatgtattgttttctttgttgaattg 553  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  43076339 ttgtctttggattcatacttatgtattgttttctttgttgaattg 43076383  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 564
Target Start/End: Complemental strand, 3301482 - 3301432
Alignment:
Q  514 tttgggttcatacttatgtattgttttctttgttgaattgttagatctttt 564  Q
    |||||| ||||||||||| |||||| ||||||||||||||  |||||||||    
T  3301482 tttgggatcatacttatgcattgttctctttgttgaattggcagatctttt 3301432  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 43085456 - 43085389
Alignment:
Q  146 tattttattgttgattacttaggtttgtttaacctgttttatctgctgaaatatctgattgcatgtctga 215  Q
    ||||||| ||||||| |||  ||||| ||| | |||||||||||||||||| ||||||||||||| ||||    
T  43085456 tattttaatgttgatcact--ggtttattttatctgttttatctgctgaaaaatctgattgcatgcctga 43085389  T

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Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 378 - 480
Target Start/End: Original strand, 1895540 - 1895642
Alignment:
Q  378 acaatttgcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgagggtaattcatttcattttgttgcca 477  Q
    |||| |||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||| |||||||| |||| ||||| |||||||||||    
T  1895540 acaagttgcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgcagttcgatcctgcgtgagggcaattgatttctttttgttgcca 1895639  T
Q  478 agt 480  Q
    |||    
T  1895640 agt 1895642  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 383 - 454
Target Start/End: Original strand, 33306144 - 33306215
Alignment:
Q  383 ttgcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg 454  Q
    |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||    
T  33306144 ttgcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgaggg 33306215  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 41139307 - 41139238
Alignment:
Q  385 gcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg 454  Q
    |||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||| ||||||||    
T  41139307 gcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccatagttcgatcctgcgtgaggg 41139238  T

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Target: chr4 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 383 - 454
Target Start/End: Original strand, 25371638 - 25371709
Alignment:
Q  383 ttgcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg 454  Q
    |||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||    
T  25371638 ttgcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgaggg 25371709  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 33870914 - 33870983
Alignment:
Q  385 gcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg 454  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||    
T  33870914 gcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgaggg 33870983  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 22365665 - 22365596
Alignment:
Q  385 gcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg 454  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||| ||||||||    
T  22365665 gcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtccgtagttcgatcctgcgtgaggg 22365596  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 22361979 - 22361910
Alignment:
Q  385 gcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg 454  Q
    |||||||||||||||||||||||| |||||||| | ||||||||||| ||||||||||||| ||||||||    
T  22361979 gcccttatagctcagtggtagagcgtcagtcttgtaaactgaaggtctgtagttcgatcctgcgtgaggg 22361910  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 385 - 445
Target Start/End: Complemental strand, 11474933 - 11474873
Alignment:
Q  385 gcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcct 445  Q
    |||| ||||||| |||||||||||  ||||||| | ||||| ||||| |||||||||||||    
T  11474933 gcccctatagcttagtggtagagcgccagtcttgtaaactggaggtctgtagttcgatcct 11474873  T

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Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 385 - 454
Target Start/End: Original strand, 2639503 - 2639572
Alignment:
Q  385 gcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg 454  Q
    ||||||||||||||||||||||||  ||||||| | ||||| ||||||||||||||||||| ||||||||    
T  2639503 gcccttatagctcagtggtagagcgccagtcttgtaaactggaggtccgtagttcgatcctgcgtgaggg 2639572  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 9749284 - 9749223
Alignment:
Q  384 tgcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcct 445  Q
    ||||| |||||||||||||||||||  ||||||| | ||||| ||||| |||||||||||||    
T  9749284 tgcccctatagctcagtggtagagcgccagtcttgtaaactggaggtctgtagttcgatcct 9749223  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 385 - 454
Target Start/End: Complemental strand, 42358193 - 42358124
Alignment:
Q  385 gcccttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg 454  Q
    ||||||||||||||||||||||||  ||||||| | ||||| ||||||||||||||||||| ||||||||    
T  42358193 gcccttatagctcagtggtagagcgccagtcttgtaaactggaggtccgtagttcgatcctgcgtgaggg 42358124  T

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Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 388 - 454
Target Start/End: Complemental strand, 45597 - 45531
Alignment:
Q  388 cttatagctcagtggtagagcatcagtcttttcaactgaaggtccgtagttcgatcctacgtgaggg 454  Q
    |||||||||||||||||||||  ||||| | | ||||||||||||||||||| ||||| ||||||||    
T  45597 cttatagctcagtggtagagcgccagtcctgtaaactgaaggtccgtagttcaatccttcgtgaggg 45531  T

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