View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18594_low_3 (Length: 528)

Name: NF18594_low_3
Description: NF18594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18594_low_3
NF18594_low_3
[»] chr4 (7 HSPs)
chr4 (379-512)||(27360225-27360359)
chr4 (1-120)||(27360563-27360681)
chr4 (158-240)||(27360489-27360571)
chr4 (267-332)||(27360405-27360470)
chr4 (414-475)||(20355094-20355155)
chr4 (452-511)||(17349851-17349911)
chr4 (453-489)||(26654496-26654532)
[»] chr7 (4 HSPs)
chr7 (399-503)||(7578578-7578682)
chr7 (427-512)||(35339023-35339109)
chr7 (395-486)||(26617783-26617874)
chr7 (452-496)||(42129556-42129600)
[»] chr1 (7 HSPs)
chr1 (399-504)||(27417432-27417537)
chr1 (426-489)||(29547810-29547872)
chr1 (452-489)||(18640579-18640616)
chr1 (399-512)||(32808810-32808922)
chr1 (410-489)||(28201683-28201761)
chr1 (456-489)||(18643283-18643316)
chr1 (452-489)||(29530155-29530192)
[»] chr8 (2 HSPs)
chr8 (426-501)||(44711349-44711424)
chr8 (452-511)||(28621770-28621830)
[»] chr5 (3 HSPs)
chr5 (419-490)||(29948461-29948532)
chr5 (399-503)||(35105072-35105176)
chr5 (395-486)||(16633297-16633388)
[»] chr3 (3 HSPs)
chr3 (440-512)||(7642337-7642409)
chr3 (452-489)||(13639659-13639696)
chr3 (424-489)||(21587186-21587250)
[»] chr2 (4 HSPs)
chr2 (425-481)||(21294956-21295011)
chr2 (425-478)||(21289658-21289710)
chr2 (452-489)||(25232053-25232090)
chr2 (409-489)||(19912335-19912414)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 379 - 512
Target Start/End: Complemental strand, 27360359 - 27360225
Alignment:
Q  379 ctttgtgtattatttttt-cacaagtgtgtctttacgttataatacgagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaagg 477  Q
    |||| ||||||||||||| |||||| ||||||||||  |||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  27360359 ctttatgtattatttttttcacaagcgtgtctttacactataatacaagtcctatttataggatacaatatgaacaagtgaatgatcaaagtaattaagg 27360260  T
Q  478 accactaaccatctattcatttatggagttatagg 512  Q
    |||||||||||||||||||||||||||||||||||    
T  27360259 accactaaccatctattcatttatggagttatagg 27360225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 27360681 - 27360563
Alignment:
Q  1 agctagttagttaagtgtatatttgttaattttatatgcaattatgcacgtagtagtattatttactaaagtgaaaataatgaccaaccaacaaatt-aa 99  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27360681 agctagttagttaagtgtatatttgttaattttat--gcaattatgcacgtagtagtattatttactaaagtgaaaataatgaccaaccaacaaattaaa 27360584  T
Q  100 gctgtaagcttaaaacaaatg 120  Q
     ||||||||||||| ||||||    
T  27360583 cctgtaagcttaaagcaaatg 27360563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 27360571 - 27360489
Alignment:
Q  158 aagcaaatgtgttccggtgaagatttgagcaaaataagacgaagaacttagctttaaaactagtgcttaattgtgtgtatata 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  27360571 aagcaaatgtgttccggtgaagatttgagcaaaataagacgaagaacttagctttaaaactagtgcttaattgtatatatata 27360489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 27360470 - 27360405
Alignment:
Q  267 ctagtgcttgataattaattagtcatcaactctaaatccaatcatctcaactaactagtaactgat 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27360470 ctagtgcttgataattaattagtcatcaactctaaatccaatcatctcaactaactagtaactgat 27360405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 475
Target Start/End: Original strand, 20355094 - 20355155
Alignment:
Q  414 gttataatacgagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaa 475  Q
    |||| |||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  20355094 gttaaaatatgagtcctatttataggatacaatatgaacaactgaatgatcaaagtaattaa 20355155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 511
Target Start/End: Complemental strand, 17349911 - 17349851
Alignment:
Q  452 caagtgaatgatcaaagtaattaaggaccactaaccatctattcatttatg-gagttatag 511  Q
    ||||||||||||||||||| ||||| ||||||||||||| || || ||||| |||||||||    
T  17349911 caagtgaatgatcaaagtagttaagaaccactaaccatccatacacttatgagagttatag 17349851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 489
Target Start/End: Complemental strand, 26654532 - 26654496
Alignment:
Q  453 aagtgaatgatcaaagtaattaaggaccactaaccat 489  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  26654532 aagtgaataatcaaagcaattaaggaccactaaccat 26654496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 399 - 503
Target Start/End: Complemental strand, 7578682 - 7578578
Alignment:
Q  399 caagtgtgtctttacgttataatacgagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaaccatctattcatt 498  Q
    ||||||||||||||   ||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| ||||| |    
T  7578682 caagtgtgtctttatactataatatgagtcctatttataggatacaatataagcaagtgaatgatcaaagtaattaaggaccactgaccatccattcact 7578583  T
Q  499 tatgg 503  Q
    |||||    
T  7578582 tatgg 7578578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 512
Target Start/End: Original strand, 35339023 - 35339109
Alignment:
Q  427 tcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaaccatctattcatttat-ggagttatagg 512  Q
    |||||||||||||||| ||||| | || |||||  |||||||||||||||||||| |||||||| ||||| |||| |||||||||||    
T  35339023 tcctatttataggatacaatatgagcatgtgaaatatcaaagtaattaaggaccattaaccatccattcacttatgggagttatagg 35339109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 486
Target Start/End: Original strand, 26617783 - 26617874
Alignment:
Q  395 ttcacaagtgtgtctttacgttataatacgagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaac 486  Q
    |||||||||||||||||||  |  |||| ||| ||||||||||||||  || || || |||||| |||||||  ||||||||| ||||||||    
T  26617783 ttcacaagtgtgtctttacaattcaatatgagccctatttataggattcaagatgaataagtgagtgatcaagataattaaggtccactaac 26617874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 496
Target Start/End: Complemental strand, 42129600 - 42129556
Alignment:
Q  452 caagtgaatgatcaaagtaattaaggaccactaaccatctattca 496  Q
    ||||||||||||||||| ||||||||| || ||||||| ||||||    
T  42129600 caagtgaatgatcaaagaaattaaggatcattaaccatatattca 42129556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 399 - 504
Target Start/End: Original strand, 27417432 - 27417537
Alignment:
Q  399 caagtgtgtctttacgttataatacgagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaaccatctattcatt 498  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| ||||| |  ||||||||||||||| |||||||| |||| |||||||| ||||| |    
T  27417432 caagtgtgtctttacattataatacgagtcctatttataagatacaatatgagtaagtgaatgatcaaattaattaagaaccattaaccatccattcact 27417531  T
Q  499 tatgga 504  Q
    ||||||    
T  27417532 tatgga 27417537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 489
Target Start/End: Complemental strand, 29547872 - 29547810
Alignment:
Q  426 gtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaaccat 489  Q
    ||||||||||||||| |||| || | ||||||||||||||||  ||||||||||||||||||||    
T  29547872 gtcctatttataggacataa-atgagcaagtgaatgatcaaacaaattaaggaccactaaccat 29547810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 18640579 - 18640616
Alignment:
Q  452 caagtgaatgatcaaagtaattaaggaccactaaccat 489  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  18640579 caagtgaatgatcaaagcaattaaggaccactaaccat 18640616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 512
Target Start/End: Complemental strand, 32808922 - 32808810
Alignment:
Q  399 caagtgtgtctttacgttataatacgagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaaccatctattcatt 498  Q
    |||||||||| ||||| || |||| ||||  ||||||||| | ||||| | | |||||||||  |||||  |||||||||||||||||||| |||||| |    
T  32808922 caagtgtgtcattacgctaaaatatgagttttatttatagaaaataat-tgagcaagtgaatattcaaatcaattaaggaccactaaccatatattcact 32808824  T
Q  499 tatggagttatagg 512  Q
     |||| ||||||||    
T  32808823 aatggggttatagg 32808810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 410 - 489
Target Start/End: Original strand, 28201683 - 28201761
Alignment:
Q  410 ttacgttataatacgagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaaccat 489  Q
    |||| ||| |||| ||||| ||||||||||| |||| || ||||||||||| ||||||| |||||| ||| |||||||||    
T  28201683 ttacattaaaatatgagtcatatttataggacataa-atgaacaagtgaattatcaaagcaattaaagactactaaccat 28201761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 18643283 - 18643316
Alignment:
Q  456 tgaatgatcaaagtaattaaggaccactaaccat 489  Q
    ||||||||||||| ||||||||||||||||||||    
T  18643283 tgaatgatcaaagcaattaaggaccactaaccat 18643316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 29530192 - 29530155
Alignment:
Q  452 caagtgaatgatcaaagtaattaaggaccactaaccat 489  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  29530192 caagtgaatgatcaaaccaattaaggaccactaaccat 29530155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 426 - 501
Target Start/End: Original strand, 44711349 - 44711424
Alignment:
Q  426 gtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaaccatctattcatttat 501  Q
    |||| |||||||||||| ||||| ||||| |||||||||||| ||||||| |||||||||||||| ||||||||||    
T  44711349 gtccgatttataggatacaatatgaacaaatgaatgatcaaaataattaaagaccactaaccatccattcatttat 44711424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 452 - 511
Target Start/End: Complemental strand, 28621830 - 28621770
Alignment:
Q  452 caagtgaatgatcaaagtaattaaggaccactaaccatctattcatttatg-gagttatag 511  Q
    |||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28621830 caagtgaatgattaaagtaattaaggaccactaaccatccattcacttatgtgagttatag 28621770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 419 - 490
Target Start/End: Original strand, 29948461 - 29948532
Alignment:
Q  419 aatacgagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaaccatc 490  Q
    |||||||||  ||||||||||||| ||| | | |||||||||||||||||||||||||||||| ||||||||    
T  29948461 aatacgagtattatttataggatacaatctgagcaagtgaatgatcaaagtaattaaggaccagtaaccatc 29948532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 503
Target Start/End: Complemental strand, 35105176 - 35105072
Alignment:
Q  399 caagtgtgtctttacgttataatacgagtcctatttataggatataatataaac-aagtgaatgatcaaagtaattaaggaccactaaccatctattcat 497  Q
    ||||| |||||||||  || |||| |||||||||||||| |||| | ||| | | |||||||||||||||||||||||||| ||||||||||| |||||     
T  35105176 caagtatgtctttacactaaaatatgagtcctatttata-gatacagtatgagcaaagtgaatgatcaaagtaattaaggatcactaaccatccattcac 35105078  T
Q  498 ttatgg 503  Q
    ||||||    
T  35105077 ttatgg 35105072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 486
Target Start/End: Original strand, 16633297 - 16633388
Alignment:
Q  395 ttcacaagtgtgtctttacgttataatacgagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaac 486  Q
    |||||||| |||||||| |  || |||| ||| ||||||||||||| | ||  | |  ||||||||||||||||||||||||| ||||||||    
T  16633297 ttcacaagcgtgtctttgcaatacaatatgagccctatttataggacacaagttgagtaagtgaatgatcaaagtaattaaggtccactaac 16633388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 440 - 512
Target Start/End: Complemental strand, 7642409 - 7642337
Alignment:
Q  440 atataatataaacaagtgaatgatcaaagtaattaaggaccactaaccatctattcatttatggagttatagg 512  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||||||  ||||| | |||| ||||||||    
T  7642409 atatgatataagcaagtaaatgatcaaagtaattaaggaccactaaccataaattcactaatggggttatagg 7642337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 13639696 - 13639659
Alignment:
Q  452 caagtgaatgatcaaagtaattaaggaccactaaccat 489  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  13639696 caagtgaatgatcaaaccaattaaggaccactaaccat 13639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 21587186 - 21587250
Alignment:
Q  424 gagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaaccat 489  Q
    ||||||||||||||||| | || || | ||||||||||||||||| | ||||||| ||||||||||    
T  21587186 gagtcctatttataggacacaa-atgagcaagtgaatgatcaaagcagttaaggatcactaaccat 21587250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 21294956 - 21295011
Alignment:
Q  425 agtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggacca 481  Q
    |||||||||||||||||| || || | |||||||||||||||||| |||||||||||    
T  21294956 agtcctatttataggatacaa-atgagcaagtgaatgatcaaagtcattaaggacca 21295011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 21289658 - 21289710
Alignment:
Q  425 agtcctatttataggatataatataaacaagtgaatgatcaaagtaattaagga 478  Q
    |||||||||||||||| | || || | |||||||||||||||||||||||||||    
T  21289658 agtcctatttataggacacaa-atgagcaagtgaatgatcaaagtaattaagga 21289710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Complemental strand, 25232090 - 25232053
Alignment:
Q  452 caagtgaatgatcaaagtaattaaggaccactaaccat 489  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  25232090 caagtgaatgatcaaaccaattaaggaccactaaccat 25232053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 489
Target Start/End: Complemental strand, 19912414 - 19912335
Alignment:
Q  409 tttacgttataatacgagtcctatttataggatataatataaacaagtgaatgatcaaagtaattaaggaccactaaccat 489  Q
    ||||| ||||||||   ||||||||||||||| | || || | ||||||| ||||||||| |||||||||| |||||||||    
T  19912414 tttacattataatataggtcctatttataggacacaa-atgagcaagtgagtgatcaaagcaattaaggactactaaccat 19912335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University