View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18594_low_4 (Length: 426)
Name: NF18594_low_4
Description: NF18594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18594_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 389
Target Start/End: Original strand, 11696597 - 11696966
Alignment:
| Q |
20 |
gaatgaatgtgtaatgcttcttgggaaaatgagtagtgaaggaaggtgtagggttgaagaaagcacacttgttaatgtgctctctgcttgcactcattta |
119 |
Q |
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| T |
11696597 |
gaatgaatgtctaatgcttcttgggaaaatgagtagtgaaggaaggtgtagggttgaagaaagcacacttgttaatgtgctctctgcttgcactcattta |
11696696 |
T |
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| Q |
120 |
gggtctcctgatcttggaaagtgtatacacgggatcttgttgaggaacattagtgaactcaatgttgttgtgaagacttcgttaattgatatgtatgtca |
219 |
Q |
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| T |
11696697 |
gggtctcctgatcttggaaagtgtatacacgggatcttgttgaggaacattagtgaactcaatgttgttgtgaagacttcgttaattgatatgtatgtca |
11696796 |
T |
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| Q |
220 |
agtgtggatgtcttgagaaaggtttacgcgtattcgagaatatgtcggagaagaatagattttcttacactgtaatgatatctggtcttgcgattcatgg |
319 |
Q |
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| T |
11696797 |
agagtggatgtcttgagaaaggtttacgcgtattcaaaaatatgtcggagaagaatagatattcttacactgtaatgatatctggtcttgcgattcatgg |
11696896 |
T |
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| Q |
320 |
acgtggtaaggaagctcttaaagttttctcagaaatgattgaagaaggtttggcaccagatgatgatgtc |
389 |
Q |
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| T |
11696897 |
acgtggtaaggaagctcttaaagttttctcagaaatgattgaagaaggtttggcaccagatgatgttgtc |
11696966 |
T |
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