View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18594_low_7 (Length: 369)
Name: NF18594_low_7
Description: NF18594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18594_low_7 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 65 - 209
Target Start/End: Complemental strand, 18796510 - 18796365
Alignment:
| Q |
65 |
aatcatatagatcaaattaggccccaccaaaatttacaaa-gaaatttatacaataaaatagaccatggatagcatgcaggagaagtgaggaattacaag |
163 |
Q |
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| T |
18796510 |
aatcatatagatgaaattaggccccaccaaaatttacaaaagaaatttatacaataaaatagaccatggatagcatgcaggagaggtgaggaattacaag |
18796411 |
T |
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| Q |
164 |
catggaggatatgtgctttgaatgcggtaaaaatccttatcagaat |
209 |
Q |
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| T |
18796410 |
catggaggatttgtgctttgaatgcggtaaaaatccttatcagaat |
18796365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 18796547 - 18796512
Alignment:
| Q |
11 |
cagagatcatgacagttcaagcatatatttagacat |
46 |
Q |
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| T |
18796547 |
cagagatcatgacagttcaaacatatatttagacat |
18796512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 188178 - 188298
Alignment:
| Q |
11 |
cagagatcatgacagttcaagcatatatttagacattaatatagataaaacaacaatcatatagatcaaattaggccccaccaaaatttacaaagaaatt |
110 |
Q |
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| T |
188178 |
cagagatcatgactgttcaaacatatatttagacatgaatatagacaaaacaacaatcatatagatcaaattaggccccaccaaaatttacaaagaaatt |
188277 |
T |
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| Q |
111 |
tatacaataaaatagaccatg |
131 |
Q |
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| T |
188278 |
tatacaattaaatagaccatg |
188298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 44644018 - 44643904
Alignment:
| Q |
14 |
agatcatgacagttcaagcatatatttagacattaatatagataaaacaacaatcatatagatcaaattaggccccaccaaaatttacaaagaaatttat |
113 |
Q |
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||||||||||||||||| ||||||||||||||| |||||||| |||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||| |
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| T |
44644018 |
agatcatgacagttcaaacatatatttagacatgaatatagacaaaacaacaagcatatagatcaaattaggacccaccgaaatttac-aagaaatttat |
44643920 |
T |
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| Q |
114 |
acaataaaatagacca |
129 |
Q |
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| T |
44643919 |
acaataaaatagacca |
44643904 |
T |
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