View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18594_low_8 (Length: 340)
Name: NF18594_low_8
Description: NF18594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18594_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 35331673 - 35331362
Alignment:
| Q |
17 |
gaacaagggatcagttgcatcaagaagataagtgcaggtccatttgaggtcattcttaacagaaaacctaagaaaaaatggtcaataaaatgtgtaggcg |
116 |
Q |
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| T |
35331673 |
gaacaagggatcagttgcatcaagaagataagtgcaggtccatttgaggtcattcttaacagaaaacctaagaaaaaacggtcaataaaatgtgtaggcg |
35331574 |
T |
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| Q |
117 |
gtaggttcatg-atgtaaatgcaacaggaaagtgaatacaattacaggatatgaggtcattattgatggttttctagatggtttcaggcctatggcattt |
215 |
Q |
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| T |
35331573 |
gtaggttcatggatgtaaatgcaacaggaaagtgaatacaattacaggatatgaggtcattattgatggttttctagatggtttcaggcctatggcattt |
35331474 |
T |
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| Q |
216 |
ttgttagatttctgagtttattttctatattaagttgcacacattatgcgactgtgtgcttattctttgcagactggctctctgttttctatcagttttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35331473 |
ttgttagatttctgagtttattttctatattaagttgcacacattatgcgactgtgtgcttattctttgcagactggctctctgttttctatcagttttg |
35331374 |
T |
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| Q |
316 |
cctacacaggtt |
327 |
Q |
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| T |
35331373 |
cctacataggtt |
35331362 |
T |
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