View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18595_high_2 (Length: 462)

Name: NF18595_high_2
Description: NF18595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18595_high_2
NF18595_high_2
[»] chr3 (2 HSPs)
chr3 (4-444)||(25601608-25602048)
chr3 (4-408)||(25596839-25597252)
[»] chr4 (18 HSPs)
chr4 (58-369)||(36643440-36643751)
chr4 (58-382)||(36636745-36637069)
chr4 (236-382)||(55967007-55967153)
chr4 (239-351)||(36613342-36613454)
chr4 (239-383)||(38863134-38863278)
chr4 (257-351)||(35974003-35974097)
chr4 (222-306)||(18364242-18364326)
chr4 (259-371)||(35968285-35968397)
chr4 (222-306)||(36598599-36598683)
chr4 (236-383)||(18083021-18083168)
chr4 (68-171)||(36613165-36613268)
chr4 (236-383)||(36617513-36617660)
chr4 (239-309)||(3978136-3978206)
chr4 (257-383)||(18359158-18359284)
chr4 (257-383)||(36603644-36603770)
chr4 (113-198)||(36668463-36668548)
chr4 (90-198)||(35968458-35968566)
chr4 (58-125)||(36909764-36909831)
[»] chr5 (4 HSPs)
chr5 (68-350)||(19674990-19675272)
chr5 (68-350)||(19658151-19658433)
chr5 (277-363)||(17667110-17667196)
chr5 (264-321)||(25064275-25064332)
[»] chr1 (2 HSPs)
chr1 (106-380)||(42602730-42603004)
chr1 (249-383)||(28928442-28928576)
[»] chr6 (6 HSPs)
chr6 (257-382)||(33844280-33844405)
chr6 (257-382)||(33840288-33840413)
chr6 (277-383)||(7140746-7140852)
chr6 (277-383)||(8680360-8680466)
chr6 (160-198)||(33840185-33840223)
chr6 (136-198)||(33844153-33844215)
[»] chr7 (4 HSPs)
chr7 (257-321)||(32413648-32413712)
chr7 (244-309)||(6844163-6844228)
chr7 (278-363)||(14677153-14677238)
chr7 (257-309)||(44501441-44501493)
[»] chr8 (2 HSPs)
chr8 (241-350)||(35335844-35335953)
chr8 (249-321)||(27701888-27701960)
[»] chr2 (2 HSPs)
chr2 (266-312)||(43864058-43864104)
chr2 (249-310)||(43875208-43875269)


Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 4 - 444
Target Start/End: Complemental strand, 25602048 - 25601608
Alignment:
Q  4 gtgagatgaagaaacacattggagaatgagatcattatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaa 103  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25602048 gtgacatgaagaaacacattggagaatgagatcactatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaa 25601949  T
Q  104 atctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatga 203  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25601948 atctttttgaggagtcgaggctggatgttaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagacga 25601849  T
Q  204 atgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601848 atgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagt 25601749  T
Q  304 ttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcagagtgtatt 403  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25601748 ttgaacagcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctcagagtgtatt 25601649  T
Q  404 gctttattcaaaaaatttataaaatcagacatgtcccttgt 444  Q
    ||||||||||||   ||||||||||||||||||||||||||    
T  25601648 gctttattcaaattttttataaaatcagacatgtcccttgt 25601608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 4 - 408
Target Start/End: Complemental strand, 25597252 - 25596839
Alignment:
Q  4 gtgagatgaagaaacacattggagaatgagatcattatcacccctaacatagactcctaattcgtggagttgggaattatgagaggaaacatactttaaa 103  Q
    |||| ||||||||||||| || ||||||||| || |||||||||||||| ||| |||||||||  | || |||||||||||||| |||||||| | |||     
T  25597252 gtgacatgaagaaacacaatgaagaatgagaccactatcacccctaacagagattcctaattcccgaaggtgggaattatgagaagaaacatagtctaat 25597153  T
Q  104 atctttttgaggagtcgaggctggatattaccatcacag---------tcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatct 194  Q
    |||||||||||||||  || | |||||||||||||| ||         |||||||||||||||| || ||||| || ||||||||||||||| |||||||    
T  25597152 atctttttgaggagttcagacgggatattaccatcatagggtgtacggtcaagatcaagagcatgcagtgaagttgtgctatcacgaagagttaaaatct 25597053  T
Q  195 tagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaa 294  Q
    |||| | | |||  | |||| |||  |||||||| ||||||  | ||||||||||||||||||||||| |||||||||||| ||||||||| || |||||    
T  25597052 tagatacggatgaggtaaaattctccatagtggggaattcaaggcaatgcaatataagggtgggaatatgtttccaaagattcttccatctcgtagacaa 25596953  T
Q  295 aatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcatgctcgttctca 394  Q
    ||||||||||||||||||||  ||||||||  ||||||||||||| ||||| ||||||  |||||||||||| |||||||||||||||| ||| || |||    
T  25596952 aatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaagaagaacattgtcgggtaaatcgctcaatctgtcttcattctcattttca 25596853  T
Q  395 gagtgtattgcttt 408  Q
     |||||||||||||    
T  25596852 cagtgtattgcttt 25596839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 58 - 369
Target Start/End: Original strand, 36643440 - 36643751
Alignment:
Q  58 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagca 157  Q
    ||||||||||||||| |||| |||||| ||| ||| ||| |||||||||||||| |||||| |||| |  |||| ||||  ||  |||||||  |||||     
T  36643440 tcctaattcgtggaggtgggtattatgggagcaaatataatttaaaatctttttaaggagttgaggttcaatatcaccacgacgatcaagattgagagct 36643539  T
Q  158 ttcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgg 257  Q
    | ||  |||| ||||||||  |||||||||||||| ||||| | ||||   |||||  |||| | ||| | ||| |  |||||||| ||||||||||| |    
T  36643540 tgcagagaagttgagctattgcgaagagtcaaaatgttagacacgaatatggcaaatttcttgacagttgaaaagtttgaggaatgtaatataagggtag 36643639  T
Q  258 gaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtc 357  Q
    ||||||||  |||||||| ||||||||||||||||||||  || |||||||| ||||||||||  |   ||||||| ||||| ||||||| |||||| ||    
T  36643640 gaatacgtgcccaaagatgcttccatcttgtggacaaaacacaggtttgaacagcatgtttggagtccaaaaatgataaaatgtgaaggataacacactc 36643739  T
Q  358 gggtaaatcact 369  Q
    |||||| |||||    
T  36643740 gggtaagtcact 36643751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 58 - 382
Target Start/End: Original strand, 36636745 - 36637069
Alignment:
Q  58 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagca 157  Q
    |||||| || ||||| |||| |||||| ||||||||||| |||||||||||||| |||||| ||||||  || ||||||| || |||||||||||||||     
T  36636745 tcctaaatcctggaggtgggtattatgggaggaaacatagtttaaaatctttttaaggagttgaggctcaatgttaccatgacggtcaagatcaagagcg 36636844  T
Q  158 ttcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgg 257  Q
    | || || || |||| |||||||||||||||| || ||||| |  ||    |||||   ||| | ||||| ||||   || | || ||| ||||| || |    
T  36636845 tgcagtgcagttgaggtatcacgaagagtcaatatgttagacacaaacatggcaaattgcttaacagtggaaaatcttgatgcatacaacataagagttg 36636944  T
Q  258 gaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtc 357  Q
    ||||||||||||| ||||   |||||||  | |||||||  ||||||   ||  |||||||||||||  ||||||||||||| |||||||  | || |||    
T  36636945 gaatacgtttccagagatgtctccatctcttagacaaaacacaagttctgacaacatgtttggtattcaaaaatgacaaaatgtgaaggattataccgtc 36637044  T
Q  358 gggtaaatcactcaatctgtcttca 382  Q
    |||||| |||||||  |||||||||    
T  36637045 gggtaagtcactcagcctgtcttca 36637069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 236 - 382
Target Start/End: Original strand, 55967007 - 55967153
Alignment:
Q  236 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 335  Q
    ||||||||||| |||||||  |||| | ||||||| |||||  ||||||||||||||||||  ||||||  || | |||| ||||| ||  ||||||| |    
T  55967007 gaggaatgcaaaataagggctggaacatgtttccagagatatctccatcttgtggacaaaacacaagttctaatgacatgcttggtcttcaaaaatgata 55967106  T
Q  336 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttca 382  Q
    |||| ||||||||||||| ||||||||| |||||  |||||||||||    
T  55967107 aaatgtgaaggagaacactgtcgggtaagtcactttatctgtcttca 55967153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 36613342 - 36613454
Alignment:
Q  239 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 338  Q
    ||||||||  |||| || |||||| ||||||||||||||||||| |||||||||||||  ||||||||| |||||| | |||  |   ||||||||||||    
T  36613342 gaatgcaaattaagagttggaataagtttccaaagatacttccaccttgtggacaaaacacaagtttgatcggcatatgtggcgtccaaaaatgacaaaa 36613441  T
Q  339 tatgaaggagaac 351  Q
    | |||||||||||    
T  36613442 tgtgaaggagaac 36613454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 383
Target Start/End: Original strand, 38863134 - 38863278
Alignment:
Q  239 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaa 338  Q
    |||||||||||||| |  |||||||||||| | ||||  ||||||||  |||||||||  |||||| ||| |||||||||||||||  |  |||||||||    
T  38863134 gaatgcaatataagagatggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaatggcatgtttggtattcaacgatgacaaaa 38863233  T
Q  339 tatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 383  Q
    | | |||||||| || ||||||||| ||||||   ||||||||||    
T  38863234 tgtaaaggagaataccgtcgggtaagtcactcggcctgtcttcat 38863278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 35974097 - 35974003
Alignment:
Q  257 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaac 351  Q
    |||||||||||||| ||||   ||||||||||||||||||| ||| |||||||||| ||||| ||||   | ||||||||||| |||||||||||    
T  35974097 ggaatacgtttccagagatgtctccatcttgtggacaaaatacaactttgaacggcctgttttgtatcgaacaatgacaaaatgtgaaggagaac 35974003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 306
Target Start/End: Complemental strand, 18364326 - 18364242
Alignment:
Q  222 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttg 306  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  18364326 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 18364242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 371
Target Start/End: Complemental strand, 35968397 - 35968285
Alignment:
Q  259 aatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcg 358  Q
    |||||||||||| ||||  | ||||||| ||||||||| ||||||||||||| | ||||| ||||   | ||||||||||| ||||||||||| | ||||    
T  35968397 aatacgtttccagagatgttcccatcttttggacaaaacgcaagtttgaacgacctgttttgtatccaataatgacaaaatgtgaaggagaactccgtcg 35968298  T
Q  359 ggtaaatcactca 371  Q
    | ||| |||||||    
T  35968297 gctaactcactca 35968285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 306
Target Start/End: Original strand, 36598599 - 36598683
Alignment:
Q  222 tagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttg 306  Q
    |||||| ||| || ||||||||||| ||||| || ||||| |||||||||||||  ||||||||||| ||||||||| |||||||    
T  36598599 tagtggaaaagtctgaggaatgcaacataagagttggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtttg 36598683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 383
Target Start/End: Complemental strand, 18083168 - 18083021
Alignment:
Q  236 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 335  Q
    ||||||| ||||| ||| || |||||| ||||||| | ||  ||||||||| | ||||||| ||||||| ||||  ||| |||||| ||  |||||||||    
T  18083168 gaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 18083069  T
Q  336 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 383  Q
    |||||  ||||| ||||| ||  ||||| |||||||| || |||||||    
T  18083068 aaatacaaaggataacactgttaggtaagtcactcaacctatcttcat 18083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 36613165 - 36613268
Alignment:
Q  68 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 167  Q
    ||||| |||| |||||  ||||||||||| || ||||||||||| |||| ||||||||  ||||||||   |||||||| |||||| |||| ||||| ||    
T  36613165 tggaggtgggtattatctgaggaaacataattcaaaatctttttaaggattcgaggctcaatattacctctacagtcaaaatcaagggcatccaatgcag 36613264  T
Q  168 ctga 171  Q
    ||||    
T  36613265 ctga 36613268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 383
Target Start/End: Original strand, 36617513 - 36617660
Alignment:
Q  236 gaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgaca 335  Q
    ||||||| ||||| ||| || |||||| ||||||| | ||  ||||||||| | ||||||| ||||||| ||||  ||| |||||| ||  |||||||||    
T  36617513 gaggaatccaatacaagagtaggaatatgtttccatatatctttccatcttctagacaaaacgcaagttcgaacaccatctttggtgtttaaaaatgaca 36617612  T
Q  336 aaatatgaaggagaacacagtcgggtaaatcactcaatctgtcttcat 383  Q
    |||||  ||||| ||||| ||  ||||| |||||||| || |||||||    
T  36617613 aaatacaaaggataacactgttaggtaagtcactcaacctatcttcat 36617660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 309
Target Start/End: Complemental strand, 3978206 - 3978136
Alignment:
Q  239 gaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 309  Q
    ||||||||| |||| || |||| |||||||||||||| |||  |||||||||| |||| ||||||||||||    
T  3978206 gaatgcaatgtaagagtaggaagacgtttccaaagatccttatatcttgtggataaaacgcaagtttgaac 3978136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 383
Target Start/End: Complemental strand, 18359284 - 18359158
Alignment:
Q  257 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 356  Q
    |||||| |||||||||||| |||||| ||| |||||||||||| |||| ||||   |||||||| ||   | | ||||||||| ||||| |||||||| |    
T  18359284 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaactcgatgtttggaatccaacattgacaaaatgtgaagaagaacacaat 18359185  T
Q  357 cgggtaaatcactcaatctgtcttcat 383  Q
    | || || |||||||  ||||||||||    
T  18359184 caggcaagtcactcagcctgtcttcat 18359158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 383
Target Start/End: Original strand, 36603644 - 36603770
Alignment:
Q  257 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 356  Q
    |||||| |||||||||||| |||||| ||| |||||||||||| |||| ||||   |||||||| ||   | | ||||||||| ||||| |||||||| |    
T  36603644 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaactcgatgtttggaatccaacattgacaaaatgtgaagaagaacacaat 36603743  T
Q  357 cgggtaaatcactcaatctgtcttcat 383  Q
    | || || |||||||  ||||||||||    
T  36603744 caggcaagtcactcagcctgtcttcat 36603770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 36668463 - 36668548
Alignment:
Q  113 aggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 198  Q
    ||||||||||| |  | |||||||| || ||||| ||||||| |   ||||| || ||||||||||||||||||||||||||||||    
T  36668463 aggagtcgaggttcaaaattaccattacggtcaacatcaagaacgcgcaatgcagttgagctatcacgaagagtcaaaatcttaga 36668548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 35968566 - 35968458
Alignment:
Q  90 aaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaa 189  Q
    ||||||| | ||||| |||||  |||||| ||| ||  |||||||||| || ||||| ||||||||| | || || |  |||| ||||||||||||||||    
T  35968566 aaacatagtctaaaaccttttcaaggagttgagactcaatattaccatgacggtcaatatcaagagcttgcagtggaattgaggtatcacgaagagtcaa 35968467  T
Q  190 aatcttaga 198  Q
    |||||||||    
T  35968466 aatcttaga 35968458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 36909831 - 36909764
Alignment:
Q  58 tcctaattcgtggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggct 125  Q
    ||||||||| ||||| |||| |||||| || | |||||| |||||||||||||| |||||| ||||||    
T  36909831 tcctaattcatggaggtgggtattatgggaagtaacatagtttaaaatctttttaaggagttgaggct 36909764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 350
Target Start/End: Original strand, 19674990 - 19675272
Alignment:
Q  68 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 167  Q
    ||||| |||| |||||| ||| ||||||| | |||||||||||| |||| ||||||||  |||| ||||| || |||||||||||| || | |||||||     
T  19674990 tggaggtgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaa 19675089  T
Q  168 ctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgttt 267  Q
     |||| ||||||||||||||||||||||||  | ||||  || |||   ||| | ||||| |||||  || |||||||| ||||| || |||||| ||||    
T  19675090 ttgaggtatcacgaagagtcaaaatcttaggcacgaatttcgaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagttt 19675189  T
Q  268 ccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaa 350  Q
    ||| |||| | ||||||| ||||||||||  |||||||||||||||| ||| |  |   ||||||||||||| ||||||||||    
T  19675190 ccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19675272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 68 - 350
Target Start/End: Original strand, 19658151 - 19658433
Alignment:
Q  68 tggagttgggaattatgagaggaaacatactttaaaatctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaag 167  Q
    ||||| |||| |||||| ||| ||||||| | |||||||||||| |||| ||||||||  |||| ||||| || |||||||||||| || | |||||||     
T  19658151 tggaggtgggtattatgtgagcaaacataatctaaaatctttttaaggattcgaggctcaatatgaccatgacggtcaagatcaagggcgtgcaatgaaa 19658250  T
Q  168 ctgagctatcacgaagagtcaaaatcttagagatgaatgccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgttt 267  Q
     |||| ||||||||||||||||||||||||  | ||||   | |||   ||| | ||||| |||||  || |||||||| ||||| || |||||| ||||    
T  19658251 ttgaggtatcacgaagagtcaaaatcttaggcacgaatttggaaaattgcttcagagtggaaaatttggaagaatgcaaaataagagttggaataagttt 19658350  T
Q  268 ccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaa 350  Q
    ||| |||| | ||||||| ||||||||||  |||||||||||||||| ||| |  |   ||||||||||||| ||||||||||    
T  19658351 ccagagattcctccatctcgtggacaaaacacaagtttgaacggcatattttgcgtccaaaaatgacaaaatgtgaaggagaa 19658433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 363
Target Start/End: Original strand, 17667110 - 17667196
Alignment:
Q  277 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaa 363  Q
    |||||||||||| ||||||| ||||||| ||||  | | |||||| ||  ||||||||||||||||||||| ||||| |||||||||    
T  17667110 cttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgtcgggtaa 17667196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 321
Target Start/End: Complemental strand, 25064332 - 25064275
Alignment:
Q  264 gtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 321  Q
    ||||||||||||  |||||||||| |||||| ||||| ||||| || |||||||||||    
T  25064332 gtttccaaagattgttccatcttggggacaatatgcatgtttggactgcatgtttggt 25064275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 106 - 380
Target Start/End: Original strand, 42602730 - 42603004
Alignment:
Q  106 ctttttgaggagtcgaggctggatattaccatcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttagagatgaat 205  Q
    |||||| |||||| | ||||  ||| |||||| || || |||||||||||||| || || || |||| ||||||||||||||||||||||||| |  |||    
T  42602730 ctttttaaggagttgcggctcaatactaccatgacggtgaagatcaagagcatgcagtgcagttgaggtatcacgaagagtcaaaatcttagacacaaat 42602829  T
Q  206 gccgcaaaactctttatagtgggaaattcagaggaatgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagttt 305  Q
       | ||||  ||| | ||||||||| |  ||||||| ||||||||| || |||||||||||||| | |  |||||||||| ||||||| ||||||||||    
T  42602830 atggaaaaatgcttcacagtgggaaagtttgaggaatccaatataagagtaggaatacgtttccacataagcttccatcttttggacaagatgcaagttt 42602929  T
Q  306 gaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctgtctt 380  Q
    ||||||  |||||||  |||  |||||||||||| ||||||| || |||||| ||||| |||||||  |||||||    
T  42602930 gaacggtgtgtttggagttaagaaatgacaaaatgtgaaggataagacagtcaggtaagtcactcagcctgtctt 42603004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 383
Target Start/End: Original strand, 28928442 - 28928576
Alignment:
Q  249 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggag 348  Q
    |||||||||||| ||| ||||| |||| ||||||||  ||||| |  |||||||||||||| || | |||||  ||  |||| || || || ||||| ||    
T  28928442 taagggtgggaagacgcttccagagattcttccatcgagtggagagtatgcaagtttgaacagcttctttggcttttaaaaaagataatatgtgaagtag 28928541  T
Q  349 aacacagtcgggtaaatcactcaatctgtcttcat 383  Q
    ||||||||| || |||||||| ||  |||||||||    
T  28928542 aacacagtccgggaaatcactgaacatgtcttcat 28928576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 257 - 382
Target Start/End: Original strand, 33844280 - 33844405
Alignment:
Q  257 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 356  Q
    |||||||||||||| ||||  |||||||| |||||||||||||||||||||||||| | || ||| ||  ||||||||||||| | ||  ||||  ||||    
T  33844280 ggaatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcagt 33844379  T
Q  357 cgggtaaatcactcaatctgtcttca 382  Q
    ||||||| ||||| | ||| ||||||    
T  33844380 cgggtaagtcacttagtctatcttca 33844405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 257 - 382
Target Start/End: Original strand, 33840288 - 33840413
Alignment:
Q  257 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagt 356  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| |||| || | || | |  |  ||||||||||||| | ||  ||||  ||||    
T  33840288 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgtattcgattctcaaaaatgacaaaatgtaaacaagaaggcagt 33840387  T
Q  357 cgggtaaatcactcaatctgtcttca 382  Q
    ||||||| ||||| | ||||||||||    
T  33840388 cgggtaagtcacttagtctgtcttca 33840413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 7140746 - 7140852
Alignment:
Q  277 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctg 376  Q
    |||||||||| |||||||||| ||||||||||| || | ||| |||||  |||| || |  || ||||| | ||||||||||||||||||||| ||  ||    
T  7140746 cttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcacttaacttg 7140845  T
Q  377 tcttcat 383  Q
    |||||||    
T  7140846 tcttcat 7140852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 8680360 - 8680466
Alignment:
Q  277 cttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaaatcactcaatctg 376  Q
    |||||||||| |||||||||| ||||||||||| || | ||| |||||  |||| || |  || ||||| | ||||||||||| ||||||||| ||  ||    
T  8680360 cttccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcacttaacttg 8680459  T
Q  377 tcttcat 383  Q
    |||||||    
T  8680460 tcttcat 8680466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 33840185 - 33840223
Alignment:
Q  160 caatgaagctgagctatcacgaagagtcaaaatcttaga 198  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  33840185 caatgcagctgagttatcacgaagagtcaaaatcttaga 33840223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 198
Target Start/End: Original strand, 33844153 - 33844215
Alignment:
Q  136 atcacagtcaagatcaagagcattcaatgaagctgagctatcacgaagagtcaaaatcttaga 198  Q
    |||||| |||| |||||||  || || || ||||||| |||||||||||||||||||||||||    
T  33844153 atcacactcaaaatcaagaatatgcagtgcagctgagttatcacgaagagtcaaaatcttaga 33844215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 32413712 - 32413648
Alignment:
Q  257 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 321  Q
    |||| ||| ||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggt 32413648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 244 - 309
Target Start/End: Complemental strand, 6844228 - 6844163
Alignment:
Q  244 caatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 309  Q
    ||||||||| ||||||| | ||||||||||||  ||||||||| |||| | |||||||||||||||    
T  6844228 caatataagagtgggaagatgtttccaaagattgttccatcttttggatagaatgcaagtttgaac 6844163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 278 - 363
Target Start/End: Complemental strand, 14677238 - 14677153
Alignment:
Q  278 ttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaatatgaaggagaacacagtcgggtaa 363  Q
    ||||||||||| ||||||| ||||||| ||||  | | |||||| ||  ||||||||||||||||||||| ||||| || ||||||    
T  14677238 ttccatcttgtagacaaaacgcaagttcgaacaacttctttggtgtttaaaaatgacaaaatatgaaggataacactgttgggtaa 14677153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 309
Target Start/End: Original strand, 44501441 - 44501493
Alignment:
Q  257 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaac 309  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||| |||||    
T  44501441 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaac 44501493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 350
Target Start/End: Complemental strand, 35335953 - 35335844
Alignment:
Q  241 atgcaatataagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggtattacaaaatgacaaaata 340  Q
    |||||||||||| || |||||||||||||| ||||  ||||||||| ||||||||| ||||||||||||  | ||||||| ||   | |||||||||||     
T  35335953 atgcaatataagtgttggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaacaacttgtttggaatgtaataatgacaaaatg 35335854  T
Q  341 tgaaggagaa 350  Q
    ||||| ||||    
T  35335853 tgaagtagaa 35335844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 27701888 - 27701960
Alignment:
Q  249 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggcatgtttggt 321  Q
    ||||||| |||| ||||||||| ||||  |||||||||||||| | ||||  |||||||||||||||||||||    
T  27701888 taagggttggaagacgtttccagagattgttccatcttgtggaaagaatggtagtttgaacggcatgtttggt 27701960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 312
Target Start/End: Original strand, 43864058 - 43864104
Alignment:
Q  266 ttccaaagatacttccatcttgtggacaaaatgcaagtttgaacggc 312  Q
    ||||||||||   |||||||| |||||||||||||||||||||||||    
T  43864058 ttccaaagattgatccatcttttggacaaaatgcaagtttgaacggc 43864104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 43875208 - 43875269
Alignment:
Q  249 taagggtgggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacg 310  Q
    |||| ||||||| ||  ||||||||||   |||||||| |||||||||||||||||||||||    
T  43875208 taagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacg 43875269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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