View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18595_low_7 (Length: 229)

Name: NF18595_low_7
Description: NF18595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18595_low_7
NF18595_low_7
[»] chr7 (1 HSPs)
chr7 (16-213)||(40749202-40749399)
[»] chr1 (4 HSPs)
chr1 (121-200)||(42286942-42287021)
chr1 (136-213)||(28496346-28496423)
chr1 (136-212)||(31644298-31644374)
chr1 (148-212)||(4160187-4160251)
[»] chr4 (1 HSPs)
chr4 (16-213)||(22085623-22085823)
[»] chr8 (2 HSPs)
chr8 (160-212)||(33186548-33186600)
chr8 (159-212)||(5788983-5789036)
[»] chr2 (1 HSPs)
chr2 (148-212)||(42898111-42898175)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 40749399 - 40749202
Alignment:
Q  16 ttctgctcgccatgttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcaga 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749399 ttcttctcgccatgttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcaga 40749300  T
Q  116 tgtatacctttttccttggttctttgttggacctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttgg 213  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40749299 tgtatacctttttccttggttctttgttggatctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttgg 40749202  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 42287021 - 42286942
Alignment:
Q  121 acctttttccttggttctttgttggacctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagatt 200  Q
    |||||| ||||||| |||||||||||| |||||||||||||||| || || ||||| |||||||||||||| ||||||||    
T  42287021 acctttctccttggctctttgttggacttttgctttagcttccaaggaagattgtgtcctcttctatgaagttgaagatt 42286942  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 28496346 - 28496423
Alignment:
Q  136 tctttgttggacctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttgg 213  Q
    ||||||||||| || ||  | ||||||||||| |||||||| ||||||||||| || ||||| || ||||||||||||    
T  28496346 tctttgttggatctctgtctaagcttccatggaaggttgtgtcctcttctatgtagttgaaggttttgatctctttgg 28496423  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 31644298 - 31644374
Alignment:
Q  136 tctttgttggacctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 212  Q
    |||||||||  ||||||||| | ||||||||||||||| || ||||| ||||| ||||| || || |||||||||||    
T  31644298 tctttgttgttcctttgcttcaacttccatggtaggttatgtcctctcctatgtagctgtaggttttgatctctttg 31644374  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 4160251 - 4160187
Alignment:
Q  148 ctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 212  Q
    |||| ||||||||||||||| |  || || |||||  |||||||||||||||| |||||||||||    
T  4160251 cttttctttagcttccatggcaaattatgtcctctcttatgaagctgaagattttgatctctttg 4160187  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 22085623 - 22085823
Alignment:
Q  16 ttctgctcgccatgttttctactaaaatgtttctttattccggtgaggtcacccaaggccctagccgcgtcgtggtggacacaagtattctccgggcaga 115  Q
    |||| ||| ||||||||||||||| |||||||||||||||| || |  || ||||| || ||||  |  || ||||| |||||||| ||||| || || |    
T  22085623 ttcttctcaccatgttttctactataatgtttctttattcctgtcaaatctcccaaagctctagaaggttcatggtgcacacaagtcttctcaggacaca 22085722  T
Q  116 tgtatacctttttcc---ttggttctttgttggacctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 212  Q
      || ||||| || |   || | |||||||| |  |||||||| |||||||||||||||||||| ||||  | ||||||||| | |||||| ||||||||    
T  22085723 cataaaccttctttcgaatttgatctttgtttgctctttgcttcagcttccatggtaggttgtgtcctcgccgatgaagctgcaaattctggtctctttg 22085822  T
Q  213 g 213  Q
    |    
T  22085823 g 22085823  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 33186600 - 33186548
Alignment:
Q  160 ttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 212  Q
    ||||||||||| || || ||||||||||| || ||||||||||||||||||||    
T  33186600 ttccatggtagattatgtcctcttctatgtagttgaagattctgatctctttg 33186548  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 5788983 - 5789036
Alignment:
Q  159 cttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 212  Q
    |||||||||||  || ||||||||||| ||||| |||||||| |||||||||||    
T  5788983 cttccatggtaaattatgacctcttctgtgaagttgaagattttgatctctttg 5789036  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 42898175 - 42898111
Alignment:
Q  148 ctttgctttagcttccatggtaggttgtgacctcttctatgaagctgaagattctgatctctttg 212  Q
    |||||||| | ||||||||| |  ||||| |||||| ||||||| ||||||||||||||||||||    
T  42898175 ctttgcttcaacttccatggcaaattgtgtcctcttttatgaagttgaagattctgatctctttg 42898111  T

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