View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18596_high_15 (Length: 212)

Name: NF18596_high_15
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18596_high_15
NF18596_high_15
[»] chr7 (14 HSPs)
chr7 (11-212)||(22875569-22875770)
chr7 (15-212)||(22888943-22889140)
chr7 (65-212)||(22885326-22885473)
chr7 (63-212)||(22814726-22814875)
chr7 (75-212)||(22880302-22880439)
chr7 (65-208)||(22858160-22858303)
chr7 (75-212)||(22805029-22805166)
chr7 (63-209)||(22913373-22913519)
chr7 (65-212)||(22830732-22830879)
chr7 (65-212)||(22839753-22839900)
chr7 (65-211)||(22809342-22809488)
chr7 (65-212)||(22893654-22893801)
chr7 (57-212)||(22897965-22898120)
chr7 (58-212)||(22825952-22826106)
[»] chr1 (1 HSPs)
chr1 (65-212)||(21150866-21151013)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 11 - 212
Target Start/End: Original strand, 22875569 - 22875770
Alignment:
Q  11 caaaggcaatccaacagttaaaaatttcgacnnnnnnnnctctgcaggtagtttaggaagttcggagatttcaagggtttgagcttgaccattaacctta 110  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22875569 caaaggcaatccaacagttaaaaatttcgacttttttttctctgcaggtagtttaggaagttcagagatttcaagggtttgagcttgaccattaacctta 22875668  T
Q  111 aaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttgg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22875669 aaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttgg 22875768  T
Q  211 tc 212  Q
    ||    
T  22875769 tc 22875770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 15 - 212
Target Start/End: Original strand, 22888943 - 22889140
Alignment:
Q  15 ggcaatccaacagttaaaaatttcgacnnnnnnnnctctgcaggtagtttaggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaac 114  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  22888943 ggcaatccaacagttaaaaatttcgacttttttttctctgcaggtagtttaggaagttcagagatttcaaggttttgagcttgaccattaaccttaaaac 22889042  T
Q  115 tccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtc 212  Q
    |||||||||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22889043 tccaaccaagaatatactgagaagctaccattaaccctgttgaagatgagaatccaacatacattctattgttgagaattgaagaaagatctttggtc 22889140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 65 - 212
Target Start/End: Original strand, 22885326 - 22885473
Alignment:
Q  65 aggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgag 164  Q
    ||||||||| |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  22885326 aggaagttcagagatttcaaggttttgagcttggctattaaccttaaaactccaaccaagaatataatgagaagctacaattaaccctgttgaagatgag 22885425  T
Q  165 aatccaacatacattctattgttgagaattggagaaagatctttggtc 212  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  22885426 aatccaacatacattctattgttgagtattggagaaagatctttggtc 22885473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 22814726 - 22814875
Alignment:
Q  63 ttaggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatg 162  Q
    ||||||||||| || ||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||    
T  22814726 ttaggaagttcagatatttcaaggttttgagcttggccattaaccttaaaactccacccaagaatataatgagaagctacaagtaaccctgttgaagatg 22814825  T
Q  163 agaatccaacatacattctattgttgagaattggagaaagatctttggtc 212  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22814826 agaatccaacatacattctattgttgagaattgaagaaagatctttggtc 22814875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 22880302 - 22880439
Alignment:
Q  75 gagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgagaatccaacat 174  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||    
T  22880302 gagatttcaaggttttgagcttgaccattaaccttaaaactccaaccaagaacataatgagaagctaaaattaaccttgttgaagatgataatccaacat 22880401  T
Q  175 acattctattgttgagaattggagaaagatctttggtc 212  Q
    |||| |||||||||||||||||||||||||||||||||    
T  22880402 acatactattgttgagaattggagaaagatctttggtc 22880439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 65 - 208
Target Start/End: Original strand, 22858160 - 22858303
Alignment:
Q  65 aggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgag 164  Q
    ||||||||  |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||  || ||||||||||||    
T  22858160 aggaagtttagagatttcaaggttttgagcttggccattaaccttaaaactccaaccaagaatataatgggaagctacaattaccccggttgaagatgag 22858259  T
Q  165 aatccaacatacattctattgttgagaattggagaaagatcttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  22858260 aatccaacatacattctattgttgagaattggagaaagatcttt 22858303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 22805029 - 22805166
Alignment:
Q  75 gagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgagaatccaacat 174  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||| |||||||||||||||||||||||||    
T  22805029 gagattacaaggttttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctgcaagtaaccctgttgaagatgagaatccaacat 22805128  T
Q  175 acattctattgttgagaattggagaaagatctttggtc 212  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  22805129 acatactattgttaagaattggagaaagatctttggtc 22805166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 22913373 - 22913519
Alignment:
Q  63 ttaggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatg 162  Q
    ||||||||||| |||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||    
T  22913373 ttaggaagttcagagattacaagattttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagttagaattgaacctgttgaagatg 22913472  T
Q  163 agaatccaacatacattctattgttgagaattggagaaagatctttg 209  Q
    |||||||||||||||| ||| |||| ||||||| |||||||||||||    
T  22913473 agaatccaacatacatactagtgttaagaattgaagaaagatctttg 22913519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 212
Target Start/End: Original strand, 22830732 - 22830879
Alignment:
Q  65 aggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgag 164  Q
    |||||| || |||||||||||| |||||| ||| ||||||||| |||||||||||||| |||||||||||||||||  ||| || |||||||||||||||    
T  22830732 aggaaggtcagagatttcaaggttttgagattggccattaaccataaaactccaaccatgaatataatgagaagctgcaatgaaccctgttgaagatgag 22830831  T
Q  165 aatccaacatacattctattgttgagaattggagaaagatctttggtc 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  22830832 aatccaacatacattctattgttgagaattggggaaagatctttggtc 22830879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 65 - 212
Target Start/End: Original strand, 22839753 - 22839900
Alignment:
Q  65 aggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgag 164  Q
    |||||| || |||||||||||| |||||| ||| ||||||||| |||||||||||||| |||||||||||||||||  ||| || |||||||||||||||    
T  22839753 aggaaggtcagagatttcaaggttttgagattggccattaaccataaaactccaaccatgaatataatgagaagctgcaatgaaccctgttgaagatgag 22839852  T
Q  165 aatccaacatacattctattgttgagaattggagaaagatctttggtc 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  22839853 aatccaacatacattctattgttgagaattggggaaagatctttggtc 22839900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 22809342 - 22809488
Alignment:
Q  65 aggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgag 164  Q
    ||||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||  |||||||||||||||||    
T  22809342 aggaagtttagagatatcaaggttttgagcttgaccattaaccttaaaactccaaccaagaacataatgagaagatagaatagaacctgttgaagatgag 22809441  T
Q  165 aatccaacatacattctattgttgagaattggagaaagatctttggt 211  Q
    |||||||||||||| ||| |||| |||||||||||||||||||||||    
T  22809442 aatccaacatacatactagtgttaagaattggagaaagatctttggt 22809488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 65 - 212
Target Start/End: Original strand, 22893654 - 22893801
Alignment:
Q  65 aggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgag 164  Q
    ||||||||| |||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || || | |||| || |  |||||     
T  22893654 aggaagttcagagattacaaggttttgagcttgaccattaatcttaaaactccaaccaagaatataatgagaagttagaaatgaaccagtagctgatgaa 22893753  T
Q  165 aatccaacatacattctattgttgagaattggagaaagatctttggtc 212  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  22893754 aatccaacatacatactattgttaagaattggagaaagatctttggtc 22893801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 22897965 - 22898120
Alignment:
Q  57 ggtagtttaggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttg 156  Q
    ||||| ||||||||||| |||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| | |||| || |    
T  22897965 ggtagcttaggaagttcagagattacaaggttttcagcttgaccattaaccttaaaactccaaccaagaatataatgagaagtgaaaactgaaccagtag 22898064  T
Q  157 aagatgagaatccaacatacattctattgttgagaattggagaaagatctttggtc 212  Q
      ||||| |||||||||||||| |||||||| | |||||||||||||||| |||||    
T  22898065 ctgatgaaaatccaacatacatactattgtttaaaattggagaaagatctctggtc 22898120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 212
Target Start/End: Original strand, 22825952 - 22826106
Alignment:
Q  58 gtagtttaggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttga 157  Q
    |||||||||||||||| || ||| ||||  |||||||||||||||||| ||||||||| ||||||||||||||||||||||  |||| | |||| || |     
T  22825952 gtagtttaggaagttcagaaattacaagattttgagcttgaccattaagcttaaaacttcaaccaagaatataatgagaagtgaaaactgaaccagtagc 22826051  T
Q  158 agatgagaatccaacatacattctattgttgagaattggagaaagatctttggtc 212  Q
     |||||||||||||||||||| |||||||| | |||||||| ||||||| |||||    
T  22826052 tgatgagaatccaacatacatactattgttcaaaattggaggaagatctctggtc 22826106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 65 - 212
Target Start/End: Complemental strand, 21151013 - 21150866
Alignment:
Q  65 aggaagttcggagatttcaagggtttgagcttgaccattaaccttaaaactccaaccaagaatataatgagaagctaaaattaaacctgttgaagatgag 164  Q
    ||||||||| |||||||||||| |||||||  | ||||||||||||||||||||||||||||||||||||||||||  || ||| |||||||||||||||    
T  21151013 aggaagttcagagatttcaaggttttgagccaggccattaaccttaaaactccaaccaagaatataatgagaagctgcaagtaaccctgttgaagatgag 21150914  T
Q  165 aatccaacatacattctattgttgagaattggagaaagatctttggtc 212  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  21150913 aatccaacatacatactattgttgagaactggagaaagatctttggtc 21150866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University