View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18596_high_3 (Length: 425)
Name: NF18596_high_3
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18596_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 4074099 - 4074516
Alignment:
| Q |
10 |
aagaatataaaccgacacaagctagtcccctaaatcaaaaaatttcaacaa-cttga--------cactaaagtaaatagctttgaaacaacttgacact |
100 |
Q |
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| T |
4074099 |
aagaaaataaaccgacacaagctagtcccctaaatcaaaaaaattcaacaaacgtgaagatgagacattaacgtaaatagctttgaaacaacttgacact |
4074198 |
T |
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| Q |
101 |
ctctatcaattagaagaaatggttaaggaagaaggagaaagaggtataaactttcttatataataattcaaaatataatttggggtccaaattgttcatg |
200 |
Q |
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| T |
4074199 |
ctatatcaattagaagaaatggttaaggaagaaggagaaagaagtataaactttcttatataataattcaaaatataatttggggtccaaattgttcatg |
4074298 |
T |
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| Q |
201 |
aaatacaatattaaaattgttgtcttctactttacattcagttttcctagatgtgatagttggtg-aaaaaagggagcatctatgcttctaaaaacttca |
299 |
Q |
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| T |
4074299 |
aaatacaatatcaaaattgttgtcttctactttacattcagttttcctagatgtgatagttggtgaaaaaaagggagcatctatgcttctaaaaacttca |
4074398 |
T |
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| Q |
300 |
actttaggtgcttc----------caggaggtaaattaagtctagcaaatgattgttccagttgggatatgaacttctactatcgatttgtcaatctctg |
389 |
Q |
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| T |
4074399 |
actttaggtgcttcaaagtttggtcaggaggtaaattaagtctagcaaatgattgttccagttgggatatgaacttctcctatcgatttgtcaatctctg |
4074498 |
T |
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| Q |
390 |
tgttactaagcaaggttc |
407 |
Q |
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| T |
4074499 |
tgttactaagcaaggttc |
4074516 |
T |
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