View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18596_low_1 (Length: 624)
Name: NF18596_low_1
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18596_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 224 - 621
Target Start/End: Complemental strand, 43367016 - 43366622
Alignment:
| Q |
224 |
tgatgcatacaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttcttgccagtttcctccgccgtcgtctcattca |
323 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43367016 |
tgatgcataaaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttctttccagtttcctccgccgtcgtctcattca |
43366917 |
T |
|
| Q |
324 |
ccgcctcctcatttccgccatctccgtctgccttctccttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcct |
423 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43366916 |
tcgcctcctcatttcctccatctccgtctgccttctctttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcct |
43366817 |
T |
|
| Q |
424 |
tctacttcaattacattcctcattccattctgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatca |
523 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43366816 |
tctacttcaattacattcctcattccattttgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatca |
43366717 |
T |
|
| Q |
524 |
gcaatccccatttcacattccggtaatcaaacaatgttctcaccttcnnnnnnnatgcattttttgttatgttgctaatatcttccctttgcttcttc |
621 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
43366716 |
gcaatccccatttcacattccggtaatcaaacaatgttctcacctt---tttttattcattttttgttatgttgctaatatcttccttttgtttcttc |
43366622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 43367229 - 43367042
Alignment:
| Q |
17 |
catattcatctcattcttcttctacctctaattccatgcatttgtcgtaactgtaattgcaaacacaattataa---------taatcaataacgtacat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43367229 |
catattcatctcattcttcttctacctctaattccatgcatttgtcgtaactgtaattgcaaacacaattataataataataataatcaataacgtacat |
43367130 |
T |
|
| Q |
108 |
tacattactccatgcattacatattaatatcatcactagctaacacatat--------atacatacaccaaactgtaattaatattcattc |
190 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43367129 |
tacattactccatgcattacatat---tatcatcactagctaacacatatatacatacatacatacaccaaactgtaattaatattcattc |
43367042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University