View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18596_low_10 (Length: 306)
Name: NF18596_low_10
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18596_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 26216194 - 26216483
Alignment:
| Q |
1 |
ccctcaaaacacccaaaactcaaacaagagctagcgacaactagaccatatattccttaaggaccaacaaattagggaagaattttttaaagtcgtcaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26216194 |
ccctcaaaacacccaaaactcaaacaagagctagcgacaactagaccatgtattccttaaggaccaacaaattagggaagaattttttaaagtcgtcaca |
26216293 |
T |
|
| Q |
101 |
accaaagactaatcattctccaaccaaaggtttggccaattattttgacgatccatctcaattgctctcatcacaccagatagatagctctgccatgcaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26216294 |
accaaagattaatcattctccaaccaaaggtttggccaattattttgacgatccatctcaattgctctcatcacaccagatagatagctctgccatgcaa |
26216393 |
T |
|
| Q |
201 |
gctgatccctgagcaagattattatcaaagatgagcattgctatcagtaaatatgcctccacaggataatgatacattggtggctgcaac |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26216394 |
gctgatccctgagcaagattattatcaaagatgagcattgctatcaggaaagatgcctccacaggataatgatacattggtggctgcaac |
26216483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10552061 - 10552025
Alignment:
| Q |
1 |
ccctcaaaacacccaaaactcaaacaagagctagcga |
37 |
Q |
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| T |
10552061 |
ccctcaaaacaccctaaactcaaacaagagctagcga |
10552025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31902701 - 31902740
Alignment:
| Q |
1 |
ccctcaaaacacccaaaactcaaacaagagctagcgacaa |
40 |
Q |
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|||||||||||||| |||||||||| |||||||||||||| |
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| T |
31902701 |
ccctcaaaacaccctaaactcaaaccagagctagcgacaa |
31902740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 46133569 - 46133606
Alignment:
| Q |
4 |
tcaaaacacccaaaactcaaacaagagctagcgacaac |
41 |
Q |
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||||||||||| |||||||||| ||||||||||||||| |
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| T |
46133569 |
tcaaaacaccctaaactcaaaccagagctagcgacaac |
46133606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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