View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18596_low_11 (Length: 299)
Name: NF18596_low_11
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18596_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 30278018 - 30278289
Alignment:
| Q |
18 |
acaagtgagaagaaacttcagaaaattctctgataggtaaatcatcatttttgtcctatattttgttactcaaattttgtatgtagtaatttaatttcta |
117 |
Q |
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| T |
30278018 |
acaagtgagaagaaactttagaaaattctctgataggtaaatcatcatttttgtcctatattttgttactcaaattttgtatgtagtaatttaatttcta |
30278117 |
T |
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| Q |
118 |
aattagctggctcaatacatttaaaaggcttaaagtgtgtgnnnnnnnatgtaagacgagaaaataacataaaaacgagttttacaaaaaattaagaata |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30278118 |
aattagccggctcaatacatttaaaaggcttaaagtgtgtgtttttttatgtaagacgagaaaataacataaaaaccagttttacaaaaaattaagaata |
30278217 |
T |
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| Q |
218 |
tattagacagtcatagatccctctttataggcctcacattcaccacttgctggacatgaaatatgatctctg |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30278218 |
tattagacagtcatagatccctctttataggcctcacattcaccacttgctggacatgaaatatgatctctg |
30278289 |
T |
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