View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18596_low_13 (Length: 265)

Name: NF18596_low_13
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18596_low_13
NF18596_low_13
[»] chr2 (4 HSPs)
chr2 (26-246)||(15116609-15116850)
chr2 (153-182)||(18255946-18255975)
chr2 (153-182)||(30717461-30717490)
chr2 (153-201)||(37419823-37419871)
[»] scaffold0008 (1 HSPs)
scaffold0008 (153-203)||(263303-263353)
[»] chr7 (4 HSPs)
chr7 (153-203)||(9778572-9778622)
chr7 (153-203)||(5409773-5409823)
chr7 (153-203)||(29763131-29763181)
chr7 (154-182)||(8842282-8842310)
[»] chr3 (7 HSPs)
chr3 (153-203)||(55401142-55401192)
chr3 (153-200)||(1389908-1389955)
chr3 (153-203)||(15999952-16000002)
chr3 (153-203)||(17276794-17276844)
chr3 (152-201)||(24204982-24205031)
chr3 (152-201)||(25775576-25775625)
chr3 (151-203)||(4987220-4987272)
[»] chr1 (6 HSPs)
chr1 (153-202)||(1704937-1704986)
chr1 (153-200)||(16297223-16297270)
chr1 (153-182)||(48415668-48415697)
chr1 (153-197)||(21365994-21366038)
chr1 (153-197)||(22515829-22515873)
chr1 (152-200)||(42359390-42359438)
[»] chr4 (6 HSPs)
chr4 (153-200)||(20633541-20633588)
chr4 (156-203)||(30838288-30838335)
chr4 (153-203)||(3947703-3947753)
chr4 (152-202)||(22440558-22440608)
chr4 (153-203)||(23292928-23292978)
chr4 (153-203)||(30982809-30982859)
[»] scaffold0361 (1 HSPs)
scaffold0361 (153-203)||(14594-14644)
[»] chr8 (2 HSPs)
chr8 (153-199)||(13397622-13397668)
chr8 (152-201)||(44067596-44067645)
[»] chr6 (3 HSPs)
chr6 (153-203)||(8776910-8776960)
chr6 (153-203)||(31384997-31385047)
chr6 (153-182)||(10649376-10649405)
[»] scaffold0380 (1 HSPs)
scaffold0380 (153-182)||(8689-8718)
[»] scaffold0306 (1 HSPs)
scaffold0306 (152-180)||(13496-13524)
[»] scaffold0152 (1 HSPs)
scaffold0152 (152-180)||(21803-21831)
[»] chr5 (1 HSPs)
chr5 (153-197)||(39698625-39698669)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 9e-79; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 26 - 246
Target Start/End: Original strand, 15116609 - 15116850
Alignment:
26 tactagatttcaaacaactatcataaattattttgtcagctagtcttgaatttaacacctctttggctgtattctagtgtgcatcaagtatatggagatg 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15116609 tactagatttcaaacaactatcataaattattttgtcagctagtcttgaatttaacacctctttggctgtattctagtgtgcatcaagtatatggagatg 15116708  T
126 taaatgtttacatgatat-------------------gccaatgtaatgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtgccg 206  Q
    ||||||||||||| ||||                   |||||||||||||||||| |||||| || | ||||||||||||||||||||||||||||||||    
15116709 taaatgtttacataatatatataagaatgtttactaagccaatgtaatgaagcacagacacttctcgaattaggcgcgtcttggtatcggacacgtgccg 15116808  T
207 gtgtccactgacac--atgattacattaaatagagaggtcaa 246  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
15116809 gtgtccactgacacatatgattacattaaatagagaggtcaa 15116850  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 18255946 - 18255975
Alignment:
153 atgaagcacggacactccttggattaggcg 182  Q
    ||||||||||||||||||||||||||||||    
18255946 atgaagcacggacactccttggattaggcg 18255975  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 30717461 - 30717490
Alignment:
153 atgaagcacggacactccttggattaggcg 182  Q
    ||||||||||||||||||||||||||||||    
30717461 atgaagcacggacactccttggattaggcg 30717490  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 37419871 - 37419823
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacg 201  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||||||    
37419871 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 37419823  T

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Target: scaffold0008 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 263303 - 263353
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    ||||| ||||||||||||| |||||||||| |||||||||||| |||||||    
263303 atgaaccacggacactcctcggattaggcgtgtcttggtatcgaacacgtg 263353  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 9778622 - 9778572
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    |||||||||||||||||||||||||||||| |||  ||| |||||||||||    
9778622 atgaagcacggacactccttggattaggcgtgtcccggtgtcggacacgtg 9778572  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 5409773 - 5409823
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||||||||    
5409773 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtg 5409823  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 29763131 - 29763181
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    ||||||||||||||||||| |||||||||| ||| || | |||||||||||    
29763131 atgaagcacggacactcctcggattaggcgtgtcctgatgtcggacacgtg 29763181  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 182
Target Start/End: Original strand, 8842282 - 8842310
Alignment:
154 tgaagcacggacactccttggattaggcg 182  Q
    |||||||||||||||||||||||||||||    
8842282 tgaagcacggacactccttggattaggcg 8842310  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 55401192 - 55401142
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    ||||||||||||||||||| |||||||||| |||| ||| |||||||||||    
55401192 atgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtg 55401142  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 1389955 - 1389908
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacac 200  Q
    |||||||||||||||||||||||||||||  ||| |||| ||||||||    
1389955 atgaagcacggacactccttggattaggcatgtcctggtgtcggacac 1389908  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 15999952 - 16000002
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    |||| ||||||||||||||||||||||||| |||  ||| |||||||||||    
15999952 atgatgcacggacactccttggattaggcgtgtcccggtgtcggacacgtg 16000002  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 17276844 - 17276794
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    |||||||||||||||| || |||||||| |||||| ||| |||||||||||    
17276844 atgaagcacggacacttctcggattaggtgcgtctcggtgtcggacacgtg 17276794  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 24204982 - 24205031
Alignment:
152 aatgaagcacggacactccttggattaggcgcgtcttggtatcggacacg 201  Q
    |||||||||||||||||||| | |||||||| ||| |||| |||||||||    
24204982 aatgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacg 24205031  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 25775625 - 25775576
Alignment:
152 aatgaagcacggacactccttggattaggcgcgtcttggtatcggacacg 201  Q
    ||||||||||| |||||||| |||||||||| ||| |||| |||||||||    
25775625 aatgaagcacgaacactcctcggattaggcgtgtcctggtgtcggacacg 25775576  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 4987220 - 4987272
Alignment:
151 taatgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    |||||||| |||||||||||| |||||||||| |||  ||| |||||||||||    
4987220 taatgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtg 4987272  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 1704937 - 1704986
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgt 202  Q
    |||||||| ||||||||||||||||||||| |||| ||| ||||||||||    
1704937 atgaagcatggacactccttggattaggcgtgtctcggtgtcggacacgt 1704986  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 16297223 - 16297270
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacac 200  Q
    ||||||||||||||||||| |||||||||| ||| |||| ||||||||    
16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacac 16297270  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 48415668 - 48415697
Alignment:
153 atgaagcacggacactccttggattaggcg 182  Q
    ||||||||||||||||||||||||||||||    
48415668 atgaagcacggacactccttggattaggcg 48415697  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 21365994 - 21366038
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcgga 197  Q
    ||||||||||||||||||| |||||||||| |||| ||| |||||    
21365994 atgaagcacggacactcctcggattaggcgtgtctcggtgtcgga 21366038  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Original strand, 22515829 - 22515873
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcgga 197  Q
    ||||||||||||||||||| |||||||||| |||| ||| |||||    
22515829 atgaagcacggacactcctcggattaggcgtgtctcggtgtcgga 22515873  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 42359390 - 42359438
Alignment:
152 aatgaagcacggacactccttggattaggcgcgtcttggtatcggacac 200  Q
    |||||||||||||||||||| |||||||||| |||  ||| ||||||||    
42359390 aatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 42359438  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 20633588 - 20633541
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacac 200  Q
    |||||||||| ||||||||||||||||||| |||||||| || |||||    
20633588 atgaagcacgaacactccttggattaggcgtgtcttggtgtccgacac 20633541  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 30838335 - 30838288
Alignment:
156 aagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    |||||||||||||||| || ||||||| |||||||| |||||||||||    
30838335 aagcacggacactcctcgggttaggcgtgtcttggtgtcggacacgtg 30838288  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 3947703 - 3947753
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    ||||||||||||||||||| |||||||| | ||| |||| |||||||||||    
3947703 atgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtg 3947753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 22440558 - 22440608
Alignment:
152 aatgaagcacggacactccttggattaggcgcgtcttggtatcggacacgt 202  Q
    |||||||||||||||||||| |||||||||| ||| | || ||||||||||    
22440558 aatgaagcacggacactcctcggattaggcgtgtcctagtgtcggacacgt 22440608  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 23292928 - 23292978
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    ||||||||||||||||||| |||||||||| |||  ||| |||||||||||    
23292928 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtg 23292978  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 30982809 - 30982859
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    ||||||||||||||||| |||||||||||| |||  ||| |||||||||||    
30982809 atgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtg 30982859  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 14644 - 14594
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    |||||||||| ||||||||| ||||||||| |||| ||| |||||||||||    
14644 atgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtg 14594  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 13397668 - 13397622
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggaca 199  Q
    ||||||||||||||||||||| |||||||| |||| ||| |||||||    
13397668 atgaagcacggacactccttgaattaggcgtgtctcggtgtcggaca 13397622  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 201
Target Start/End: Complemental strand, 44067645 - 44067596
Alignment:
152 aatgaagcacggacactccttggattaggcgcgtcttggtatcggacacg 201  Q
    |||||||||||||||||||| | |||||||| ||| |||| |||||||||    
44067645 aatgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacg 44067596  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 8776910 - 8776960
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    ||||||||||||||||||| |||||||| | |||| ||| |||||||||||    
8776910 atgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtg 8776960  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 31385047 - 31384997
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcggacacgtg 203  Q
    |||||||||||||||||||||||||||||| |||  ||| | |||||||||    
31385047 atgaagcacggacactccttggattaggcgtgtcccggtgtaggacacgtg 31384997  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 10649405 - 10649376
Alignment:
153 atgaagcacggacactccttggattaggcg 182  Q
    ||||||||||||||||||||||||||||||    
10649405 atgaagcacggacactccttggattaggcg 10649376  T

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Target: scaffold0380 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 182
Target Start/End: Complemental strand, 8718 - 8689
Alignment:
153 atgaagcacggacactccttggattaggcg 182  Q
    ||||||||||||||||||||||||||||||    
8718 atgaagcacggacactccttggattaggcg 8689  T

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Target: scaffold0306 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 180
Target Start/End: Complemental strand, 13524 - 13496
Alignment:
152 aatgaagcacggacactccttggattagg 180  Q
    |||||||||||||||||||||||||||||    
13524 aatgaagcacggacactccttggattagg 13496  T

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Target: scaffold0152 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 180
Target Start/End: Original strand, 21803 - 21831
Alignment:
152 aatgaagcacggacactccttggattagg 180  Q
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21803 aatgaagcacggacactccttggattagg 21831  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 39698669 - 39698625
Alignment:
153 atgaagcacggacactccttggattaggcgcgtcttggtatcgga 197  Q
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39698669 atgaagcacggacactcctcggattaggcgtgtctcggtgtcgga 39698625  T

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