View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18596_low_17 (Length: 209)
Name: NF18596_low_17
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18596_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 4388949 - 4388786
Alignment:
| Q |
19 |
gagcgtaatcagagtgcatttgagatggtaagatgnnnnnnntattgaacgtgaattgtaaaatacctagcacttacttgcttatattaatt-tatttga |
117 |
Q |
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| T |
4388949 |
gagcgtaatcagagtgcatttgagatggtaagatgaaaaaaatattgaatgtcaattgtaaaatacctagcacttacttgcttatattaattgtatttga |
4388850 |
T |
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| Q |
118 |
atttgtttaggtccatgctaagaacagaaaccttttgtggcaaaaaacttataatgatgatgtc |
181 |
Q |
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| T |
4388849 |
atttgtttaggtccatgctaagaacagaaaccttttgtggcaaaaaacttataatgatgttgtc |
4388786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 4376249 - 4376098
Alignment:
| Q |
24 |
taatcagagtgcatttgagatggtaagatgnnnnnnntattgaacgtgaattgtaaaatacctagcacttacttgcttatattaatt-tatttgaatttg |
122 |
Q |
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| T |
4376249 |
taatcggagtgcatttgagatggtaagatgagaaaaatattgaatgtgaattgtaaaatacatagcacttacttgcttatgctaattgtatttgtatttg |
4376150 |
T |
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| Q |
123 |
tttaggtccatgctaagaacagaaaccttttgtggcaaaaaacttataatgat |
175 |
Q |
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| T |
4376149 |
-ttaggtccatgctaagagaagaaactctttgtggcaaaatatttataatgat |
4376098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 4383828 - 4383663
Alignment:
| Q |
19 |
gagcgtaatcagagtgcatttgagatggtaagatgnnnnnnntattgaacgtgaattgtaaaatacctagcact--tacttgcttatattaatt-tattt |
115 |
Q |
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| T |
4383828 |
gagcgtaatcggagtgccttcgagatggtaagatgaaaaaaatattgaatgtgaattgtaaaatacttagtagtagtacctgattatcttaattgtatct |
4383729 |
T |
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| Q |
116 |
gaatttgtttaggtccatgctaagaacagaaaccttttgtggcaaaaaacttataatgatgatgtc |
181 |
Q |
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| T |
4383728 |
atatttgttcaggttcatgctaagagaagaaaccttttgtggcaaaaggcttataatgatgctgtc |
4383663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 162
Target Start/End: Original strand, 4415644 - 4415733
Alignment:
| Q |
70 |
tgaattgtaaaatacctagcacttacttgcttatattaatt-tatttgaatttgtttaggtccatgctaagaacagaaaccttttgtggcaaaa |
162 |
Q |
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| T |
4415644 |
tgaattgtaaaataccta----ctacttgcttatattaattgtatttgtattggtataggtccacgctaagagaagaaaccgtttgaggcaaaa |
4415733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 3595915 - 3596078
Alignment:
| Q |
23 |
gtaatcagagtgcatttgagatggtaagatgnnnnnnntattgaacgtgaattgtaaaatacctagcacttacttgcttatattaatt-------tattt |
115 |
Q |
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| T |
3595915 |
gtaatcagagtgcctttgagatggtaagatgaaaaaa--attgaatgtgaattgtaaaatacatagtacttaattgcttatcttaattgtatttgtattt |
3596012 |
T |
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| Q |
116 |
gaatttgtttaggtccatgctaagaacagaaaccttttgtggcaaaaaacttataatgatgatgtc |
181 |
Q |
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| T |
3596013 |
gtatttgtttaggtccatgctaagagaagaaaccttttgtggcaaaaaacttataatgatgttgtc |
3596078 |
T |
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