View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18596_low_2 (Length: 428)
Name: NF18596_low_2
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18596_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 42926563 - 42926176
Alignment:
| Q |
19 |
ttcataccattggaattcgagttaacggaaacaaatttgtacatgtgattccaaggaacgcgtcgaggccagcaatgaggagtgcagtttttacaacaat |
118 |
Q |
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| T |
42926563 |
ttcataccattggaattcgagttaacagaaacaaatttgtacatgtgattccaaggaacgcgtcgaggccagcaatgaggagtgcagtttttacaacaat |
42926464 |
T |
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| Q |
119 |
tcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctgaagaaaaccatcgttgggaaaattacataataactgaaata |
218 |
Q |
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| T |
42926463 |
tcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctaaagaaacccatcgtt-----------ataataactgaaata |
42926375 |
T |
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| Q |
219 |
cctgcagcaccaaaaggagttccagaaatcactgtttgcttggcgatagaccatgaaaactggctcacagttattgcatcggttaggatgcatggtgaac |
318 |
Q |
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| T |
42926374 |
cctgcagcaccaaaaggagttccagaaatcactgtttgcttggcgatagaccatgaaaactggctcacagttattgcgtcggttaggatgcatggtgaac |
42926275 |
T |
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| Q |
319 |
aatattatgatattcctgttactcaagcaaatatgacannnnnnngaagaaggaccactttatttgtgtgatgattcactaattagaagctatgatgatg |
418 |
Q |
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| T |
42926274 |
aatattatgatattcctgttactcaagcaaatatgaca-ttttttgaagaaggaccactttatttgtgtgatgattcactaattagaagctatgatgatg |
42926176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 47843450 - 47843586
Alignment:
| Q |
111 |
acaacaattcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctgaagaaaaccatcgttgggaaaattacataataa |
210 |
Q |
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| T |
47843450 |
acaactattcatgataatcaaactgaggcattgatccttgtctacgaaggtgagggacagaaggctgaagaaaaccaccttttgggatatttgaaaataa |
47843549 |
T |
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| Q |
211 |
ctgaaatacctgcagcaccaaaaggagttccagaaat |
247 |
Q |
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| T |
47843550 |
tgggaatacctgcagcaccaagaggagttccagaaat |
47843586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 309
Target Start/End: Complemental strand, 47844943 - 47844789
Alignment:
| Q |
155 |
cgaaggtgagggagagaaggctgaagaaaaccatcgttgggaaaattacataataactgaaatacctgcagcaccaaaaggagttccagaaatcactgtt |
254 |
Q |
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| T |
47844943 |
cgaaggtgaggcacagaaggttgaagagaatcaccttttgggatatttcaaaataactgaaatacctgaagcaccaaaaggagctcctgaaatcaatgtg |
47844844 |
T |
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| Q |
255 |
tgcttggcgatagaccatgaaaactggctcacagttattgcatcggttaggatgc |
309 |
Q |
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| T |
47844843 |
agcatggacatagaccataaaaacaggttgacagttattgcttctgttgggatgc |
47844789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 235
Target Start/End: Complemental strand, 44727484 - 44727355
Alignment:
| Q |
106 |
tttttacaacaattcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctgaagaaaaccatcgttgggaaaattacat |
205 |
Q |
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| T |
44727484 |
ttttgacaactattcatgataatcaaactgcggcattgatcgttgtttacgaaggtgagggacagaaggttgaagaaaaccaacttttaggatatttcaa |
44727385 |
T |
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| Q |
206 |
aataactgaaatacctgcagcaccaaaagg |
235 |
Q |
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| T |
44727384 |
actaactgaaatacctaaagcaccaaaagg |
44727355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 47878987 - 47878953
Alignment:
| Q |
215 |
aatacctgcagcaccaaaaggagttccagaaatca |
249 |
Q |
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| T |
47878987 |
aatacctgcagcaccaaaaggagttccagatatca |
47878953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 106 - 249
Target Start/End: Original strand, 808590 - 808733
Alignment:
| Q |
106 |
tttttacaacaattcatgattatcaaactgaggcgttgatagttgtcatcgaaggtgagggagagaaggctgaagaaaacca-tcgttgggaaaattaca |
204 |
Q |
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| T |
808590 |
ttttcacaactattcatgataatcaaactgaggcattgatacttgtgtacgaaggtgagggaaagaaggcagaagaaaaccacttgttagg-atatttca |
808688 |
T |
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| Q |
205 |
taataactgaaatacctgcagcaccaaaaggagttccagaaatca |
249 |
Q |
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| T |
808689 |
agataatgggaatacctgcagcaccaaaaggagttcctgaaatca |
808733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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