View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18596_low_4 (Length: 392)

Name: NF18596_low_4
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18596_low_4
NF18596_low_4
[»] chr4 (17 HSPs)
chr4 (141-325)||(53145231-53145415)
chr4 (144-268)||(53142886-53143011)
chr4 (1-80)||(53145091-53145170)
chr4 (17-80)||(53145494-53145557)
chr4 (144-183)||(27133654-27133693)
chr4 (141-183)||(20435940-20435982)
chr4 (144-183)||(23765527-23765566)
chr4 (145-183)||(11086379-11086417)
chr4 (141-183)||(34236282-34236324)
chr4 (141-183)||(35808317-35808359)
chr4 (144-178)||(46405581-46405615)
chr4 (145-179)||(52708463-52708497)
chr4 (141-182)||(35498936-35498977)
chr4 (146-183)||(51581580-51581617)
chr4 (147-183)||(14193814-14193850)
chr4 (142-178)||(34360973-34361009)
chr4 (147-183)||(53333515-53333551)
[»] chr7 (7 HSPs)
chr7 (141-183)||(24937933-24937975)
chr7 (141-183)||(48705580-48705622)
chr7 (144-183)||(30028172-30028211)
chr7 (144-175)||(36016421-36016452)
chr7 (147-181)||(23070190-23070224)
chr7 (146-183)||(3408140-3408177)
chr7 (147-183)||(1521173-1521209)
[»] chr2 (3 HSPs)
chr2 (141-183)||(1870463-1870505)
chr2 (144-183)||(36087448-36087487)
chr2 (145-183)||(37519639-37519677)
[»] chr1 (15 HSPs)
chr1 (141-183)||(32267958-32268000)
chr1 (141-183)||(46289701-46289743)
chr1 (142-183)||(14331786-14331827)
chr1 (142-183)||(44359788-44359829)
chr1 (142-183)||(48938585-48938626)
chr1 (142-178)||(42795480-42795516)
chr1 (143-183)||(43168090-43168130)
chr1 (144-183)||(7190593-7190632)
chr1 (144-179)||(8001720-8001755)
chr1 (141-183)||(27600-27642)
chr1 (145-183)||(1905707-1905745)
chr1 (214-260)||(2258594-2258640)
chr1 (141-183)||(12173242-12173284)
chr1 (145-183)||(44603735-44603773)
chr1 (144-184)||(13969067-13969107)
[»] chr8 (8 HSPs)
chr8 (142-183)||(11295583-11295624)
chr8 (142-181)||(18068241-18068280)
chr8 (147-183)||(3137508-3137544)
chr8 (214-272)||(229409-229467)
chr8 (214-272)||(705821-705879)
chr8 (214-272)||(743032-743090)
chr8 (214-272)||(866928-866986)
chr8 (141-197)||(10452001-10452057)
[»] chr6 (7 HSPs)
chr6 (144-183)||(2470456-2470495)
chr6 (142-181)||(12226450-12226489)
chr6 (143-179)||(6507509-6507545)
chr6 (141-183)||(6770936-6770978)
chr6 (141-183)||(19645946-19645988)
chr6 (144-182)||(26572198-26572236)
chr6 (141-183)||(32800307-32800349)
[»] chr5 (5 HSPs)
chr5 (144-183)||(16315653-16315692)
chr5 (144-183)||(35626693-35626732)
chr5 (144-183)||(35653376-35653415)
chr5 (141-183)||(5471327-5471369)
chr5 (147-183)||(6539909-6539945)
[»] chr3 (6 HSPs)
chr3 (144-183)||(12373093-12373132)
chr3 (143-181)||(2852748-2852786)
chr3 (145-179)||(6785767-6785801)
chr3 (145-183)||(42437685-42437723)
chr3 (141-174)||(34228236-34228269)
chr3 (147-179)||(39229370-39229402)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 5e-81; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 141 - 325
Target Start/End: Original strand, 53145231 - 53145415
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagaccagaaaaataaataaaaacaattgaaaacagaagaatcacataaatttgagatggcaa 240  Q
    ||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  53145231 agtttccttaaccattgtcttgagggcactagttagcaagaccaaaaaaataaataaaaacaattgaaaatagaagaatcacataaatttgagatggcaa 53145330  T
Q  241 gaccaatttttatctattttatttcttattttaactatgaaatccgtaaactattgatgagagatatcttaaatacttgtcgata 325  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  53145331 gatcaatttttatctattttatttcttattttaactatgaaatccgtaagctattgatgagagagatcttagatacttgtcgata 53145415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 144 - 268
Target Start/End: Original strand, 53142886 - 53143011
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagaccagaaaaataaataaaaacaa-ttgaaaacagaagaatcacataaatttgagatggcaaga 242  Q
    ||||||||||||||| | |||| |||||||||||||||||  |||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||    
T  53142886 ttccttaaccattgttccgaggacactggttagcaagacccaaaaaataaataaaaacaaattgaaaatagaagaatcgcataaacttgagatggcaaga 53142985  T
Q  243 ccaatttttatctattttatttctta 268  Q
    |||| |||||||||||||||||||||    
T  53142986 ccaaattttatctattttatttctta 53143011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 53145091 - 53145170
Alignment:
Q  1 ttaactaaagggtccattgttggagatgctattagaattttgagtccgggccactgatgaagtaagctgaaaacgatgtg 80  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  53145091 ttaactaaaggattcattgttggagatgctattagaattttgagtccgggtcactgatgaagtaagctgaaaatgatgtg 53145170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 53145494 - 53145557
Alignment:
Q  17 ttgttggagatgctattagaattttgagtccgggccactgatgaagtaagctgaaaacgatgtg 80  Q
    |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  53145494 ttgttggatatgctattagaattttgagtccgggtcactcatgaagtaagctgaaaacgatgtg 53145557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 27133654 - 27133693
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  27133654 ttccttaaccattgtcctgagggtactggttagcaagacc 27133693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 20435940 - 20435982
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  20435940 agtttccttaaccattgtcatgagagcactggttagcaagacc 20435982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 23765566 - 23765527
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  23765566 ttccttaacaattgtcctgagggcaatggttagcaagacc 23765527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 11086379 - 11086417
Alignment:
Q  145 tccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  11086379 tccttaaccattgcccttagggcactggttagcaagacc 11086417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 34236282 - 34236324
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||| |||||||||||  |||||||||||||||||||||||    
T  34236282 agtttctttaaccattgttatgagggcactggttagcaagacc 34236324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 35808359 - 35808317
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||||||   |||||||||||||||||||||||    
T  35808359 agtttccttaaccattgatgtgagggcactggttagcaagacc 35808317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 178
Target Start/End: Original strand, 46405581 - 46405615
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagca 178  Q
    |||||||||||||| ||||||||||||||||||||    
T  46405581 ttccttaaccattgccctgagggcactggttagca 46405615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 52708497 - 52708463
Alignment:
Q  145 tccttaaccattgtcctgagggcactggttagcaa 179  Q
    ||||||||||||||||| |||||||||||||||||    
T  52708497 tccttaaccattgtccttagggcactggttagcaa 52708463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 35498936 - 35498977
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagac 182  Q
    ||||||||||||||||||| ||||| || |||||||||||||    
T  35498936 agtttccttaaccattgtcttgaggacattggttagcaagac 35498977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 51581580 - 51581617
Alignment:
Q  146 ccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  51581580 ccttaaccattgccctgagggcattggttagcaagacc 51581617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 14193850 - 14193814
Alignment:
Q  147 cttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  14193850 cttaaccattgccctgagggcattggttagcaagacc 14193814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 34360973 - 34361009
Alignment:
Q  142 gtttccttaaccattgtcctgagggcactggttagca 178  Q
    |||||||||||||||| |||||||||||| |||||||    
T  34360973 gtttccttaaccattgccctgagggcactagttagca 34361009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 53333551 - 53333515
Alignment:
Q  147 cttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||||| || ||||||||||||||    
T  53333551 cttaaccattgtcctgaggacattggttagcaagacc 53333515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 24937933 - 24937975
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  24937933 agtttccttaaccattgccctgagggcactggttagcaagacc 24937975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 48705622 - 48705580
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  48705622 agtttccttaaccattgtcatgagggcactggttagcaagacc 48705580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 30028172 - 30028211
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  30028172 ttccttaaccattgtcctgagggcagtagttagcaagacc 30028211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 175
Target Start/End: Complemental strand, 36016452 - 36016421
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggtta 175  Q
    ||||||||||||||||||||||||||||||||    
T  36016452 ttccttaaccattgtcctgagggcactggtta 36016421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 23070224 - 23070190
Alignment:
Q  147 cttaaccattgtcctgagggcactggttagcaaga 181  Q
    ||||||||||||||| |||||||||||||||||||    
T  23070224 cttaaccattgtccttagggcactggttagcaaga 23070190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 3408177 - 3408140
Alignment:
Q  146 ccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  3408177 ccttaaccattgtcctgagagcaatggttagcaagacc 3408140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 1521209 - 1521173
Alignment:
Q  147 cttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  1521209 cttaaccattgtcgtgagggcactgattagcaagacc 1521173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 1870505 - 1870463
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  1870505 agtttccttaaccattgccctgagggcactggttagcaagacc 1870463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 36087448 - 36087487
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  36087448 ttccttaaccattgccctgagggcactagttagcaagacc 36087487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 37519677 - 37519639
Alignment:
Q  145 tccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  37519677 tccttaaccattgtccttagggcactagttagcaagacc 37519639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 32268000 - 32267958
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  32268000 agtttccttaaccattatcctgagggcactggttagcaagacc 32267958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 46289701 - 46289743
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||| ||||| |||||||||||||||||||||||    
T  46289701 agtttccttaacctttgtcttgagggcactggttagcaagacc 46289743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 14331827 - 14331786
Alignment:
Q  142 gtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  14331827 gtttccttaaccattgccctgagggcaccggttagcaagacc 14331786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 44359788 - 44359829
Alignment:
Q  142 gtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  44359788 gtttccttaaccattgccctgagggcactagttagcaagacc 44359829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 48938626 - 48938585
Alignment:
Q  142 gtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||||||||||| |||||||||||| ||||||    
T  48938626 gtttccttaaccattgtcctgatggcactggttagtaagacc 48938585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 42795480 - 42795516
Alignment:
Q  142 gtttccttaaccattgtcctgagggcactggttagca 178  Q
    |||||||||||||||||||||| ||||||||||||||    
T  42795480 gtttccttaaccattgtcctgaaggcactggttagca 42795516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 43168130 - 43168090
Alignment:
Q  143 tttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  43168130 tttccttaaccatttccctgagggcactggttagcaagacc 43168090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 7190593 - 7190632
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||||||| |||||| ||||||||||||||    
T  7190593 ttccttaaccattgtcctaagggcaatggttagcaagacc 7190632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 179
Target Start/End: Complemental strand, 8001755 - 8001720
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaa 179  Q
    |||||||||||||| |||||||||||||||||||||    
T  8001755 ttccttaaccattgccctgagggcactggttagcaa 8001720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 27600 - 27642
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||| |||||| ||||||| |||||||||||||||||||||||    
T  27600 agttcccttaatcattgtcgtgagggcactggttagcaagacc 27642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 1905745 - 1905707
Alignment:
Q  145 tccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  1905745 tccttaaccattgcccttagggcactggttagcaagacc 1905707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 2258594 - 2258640
Alignment:
Q  214 aagaatcacataaatttgagatggcaagaccaatttttatctatttt 260  Q
    ||||||||||| ||||||||||||| |||| |||||||||| |||||    
T  2258594 aagaatcacatgaatttgagatggcgagacaaatttttatcgatttt 2258640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 12173242 - 12173284
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||  ||||||||||||||||| |||||||    
T  12173242 agtttccttaaccattaccctgagggcactggttaacaagacc 12173284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 44603735 - 44603773
Alignment:
Q  145 tccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  44603735 tccttaaccattgcccttagggcactggttagcaagacc 44603773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 13969107 - 13969067
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacca 184  Q
    ||||||||| ||||||| ||||||||| |||||||||||||    
T  13969107 ttccttaactattgtcccgagggcactagttagcaagacca 13969067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 11295583 - 11295624
Alignment:
Q  142 gtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  11295583 gtttccttaaccattgtcatgagggcactggttagcaagacc 11295624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 18068280 - 18068241
Alignment:
Q  142 gtttccttaaccattgtcctgagggcactggttagcaaga 181  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  18068280 gtttccttaaccattgtcctgagggcaatggttagcaaga 18068241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 3137508 - 3137544
Alignment:
Q  147 cttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||| |||||||||||||||||||||||||    
T  3137508 cttaaccattgccctgagggcactggttagcaagacc 3137544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 229467 - 229409
Alignment:
Q  214 aagaatcacataaatttgagatggcaagaccaatttttatctattttatttcttatttt 272  Q
    ||||||||||| ||||||||| ||   |||||| ||||||||||||| |||||||||||    
T  229467 aagaatcacatgaatttgagacggtgggaccaacttttatctattttctttcttatttt 229409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 705879 - 705821
Alignment:
Q  214 aagaatcacataaatttgagatggcaagaccaatttttatctattttatttcttatttt 272  Q
    ||||||||||| ||||||||| ||   |||||| ||||||||||||| |||||||||||    
T  705879 aagaatcacatgaatttgagacggtgggaccaacttttatctattttctttcttatttt 705821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 743090 - 743032
Alignment:
Q  214 aagaatcacataaatttgagatggcaagaccaatttttatctattttatttcttatttt 272  Q
    ||||||||||| ||||||||| ||   |||||| ||||||||||||| |||||||||||    
T  743090 aagaatcacatgaatttgagacggtgggaccaacttttatctattttctttcttatttt 743032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 866986 - 866928
Alignment:
Q  214 aagaatcacataaatttgagatggcaagaccaatttttatctattttatttcttatttt 272  Q
    ||||||||||| ||||||||| ||   |||||| ||||||||||||| |||||||||||    
T  866986 aagaatcacatgaatttgagacggtgggaccaacttttatctattttctttcttatttt 866928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 10452001 - 10452057
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagaccagaaaaataaataa 197  Q
    |||||||||||| ||  ||||||| ||||||||||||||||||  | ||||||||||    
T  10452001 agtttccttaactatgatcctgagagcactggttagcaagacccaataaataaataa 10452057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 2470456 - 2470495
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  2470456 ttccttaaccattgtcctgagggtactggttagcaagacc 2470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 12226450 - 12226489
Alignment:
Q  142 gtttccttaaccattgtcctgagggcactggttagcaaga 181  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  12226450 gtttccttaaccattgtcctgagggcaccggttagcaaga 12226489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 6507509 - 6507545
Alignment:
Q  143 tttccttaaccattgtcctgagggcactggttagcaa 179  Q
    ||||||||||||||||||||||||||| |||||||||    
T  6507509 tttccttaaccattgtcctgagggcaccggttagcaa 6507545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 6770936 - 6770978
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||| || ||| |||||||||||||||||||||    
T  6770936 agtttccttaaccaatgccctaagggcactggttagcaagacc 6770978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 19645988 - 19645946
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||| ||||||| || ||||||||||||||    
T  19645988 agtttccttaaccattgccctgaggacaatggttagcaagacc 19645946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 26572198 - 26572236
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagac 182  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  26572198 ttccttaaccattgccctgagggcaatggttagcaagac 26572236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 32800307 - 32800349
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||||||||| |||||||||| |||| |||||||    
T  32800307 agtttccttaaccattgtcatgagggcacttgttaacaagacc 32800349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 16315653 - 16315692
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  16315653 ttccttaaccattgccctgagggcaatggttagcaagacc 16315692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 35626693 - 35626732
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  35626693 ttccttaaccattgtccttagggcactagttagcaagacc 35626732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 35653376 - 35653415
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  35653376 ttccttaaccattgccctgagggcaatggttagcaagacc 35653415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 5471327 - 5471369
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||    
T  5471327 agttttcttaaccattgccctgagggcaccggttagcaagacc 5471369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 6539909 - 6539945
Alignment:
Q  147 cttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  6539909 cttaaccattgccctgagggcattggttagcaagacc 6539945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 12373093 - 12373132
Alignment:
Q  144 ttccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  12373093 ttccttaaccattgccctgagggaactggttagcaagacc 12373132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 2852786 - 2852748
Alignment:
Q  143 tttccttaaccattgtcctgagggcactggttagcaaga 181  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  2852786 tttccttaaccattggcctaagggcactggttagcaaga 2852748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 179
Target Start/End: Complemental strand, 6785801 - 6785767
Alignment:
Q  145 tccttaaccattgtcctgagggcactggttagcaa 179  Q
    ||||||||||||| |||||||||||||||||||||    
T  6785801 tccttaaccattgccctgagggcactggttagcaa 6785767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 42437723 - 42437685
Alignment:
Q  145 tccttaaccattgtcctgagggcactggttagcaagacc 183  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  42437723 tccttaaccattgccctgagggcactggttatcaagacc 42437685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 34228269 - 34228236
Alignment:
Q  141 agtttccttaaccattgtcctgagggcactggtt 174  Q
    ||||||||||||||||||||||||| ||||||||    
T  34228269 agtttccttaaccattgtcctgaggacactggtt 34228236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 39229402 - 39229370
Alignment:
Q  147 cttaaccattgtcctgagggcactggttagcaa 179  Q
    ||||||||||||||| |||||||||||||||||    
T  39229402 cttaaccattgtccttagggcactggttagcaa 39229370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University