View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18596_low_5 (Length: 384)
Name: NF18596_low_5
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18596_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 21733342 - 21732996
Alignment:
| Q |
18 |
atgaacccattcgtggaatttatgtatactatattcctgtaactatattcacattgaaatcacttttttatgacagtttcaatcattgatatttgacagt |
117 |
Q |
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| T |
21733342 |
atgaacccattcgtggaatttatgtatactatattcctgtaactatattcacattgaaatcacttttttatgacagtttcaatcattgacatttgacaat |
21733243 |
T |
|
| Q |
118 |
accacaacatcattgatgaatattctgccccttttaatttatgggaaatactgtctaacctctaatactgatttttcacactatacttgcaaattatagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21733242 |
accacaacatcattgatgaatattctgccccttttaatttatgggaaatgctgtctaacctctaatactgatttttcacactatacttgcaaattacagt |
21733143 |
T |
|
| Q |
218 |
taagctaatttagtcgtagcttaatgcaattagctcgaaatagatacaaaaacactatataactgacactattggaaaggttcaataataaccccttgtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21733142 |
taagctaatttagtcgtagcttaatgcaattagctcgaaatagatacaaaaacagtatataactgacactattggaaaggttcaataataaccccttgtt |
21733043 |
T |
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| Q |
318 |
cacaatctaatctatttagtgccagtttggtatagtggtgggagtat |
364 |
Q |
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| T |
21733042 |
cacaatctaatctatttagtgcctgtttggtatagtggtgggagtat |
21732996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 3671885 - 3672199
Alignment:
| Q |
20 |
gaacccattcgtggaatttatgtatactatattcctgtaactatattcacattgaaatcacttttttatgacagtttcaatcattgatatttgacagtac |
119 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
3671885 |
gaacccattcttggaatttatgtatactatattcctgtaactatattcacattgaaatcacttttttatgacagtttcaatcaatgaaatttgacagtac |
3671984 |
T |
|
| Q |
120 |
cacaacatcattgatgaatattctgccccttttaatttatgggaaatactgtctaacctctaatactgatttttcacactatacttgcaaattatagtta |
219 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| | ||||||||||||||||| |||||||| ||||| ||||| |
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| T |
3671985 |
cacaacatcattgatgaatattttgtcccttttaatttatgggaaatgttgtctaacctttgatactgatttttcacaccatacttgc-aattacagtta |
3672083 |
T |
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| Q |
220 |
agctaatttagtcgtagcttaatgcaattagctcgaaatagatacaaaaacactatataactgacactattggaaaggttcaataataaccccttgttca |
319 |
Q |
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|| ||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| | ||| | ||||||| ||||||||||||||||||||||| |
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| T |
3672084 |
agttaatttagtcgtagcttaatgcaattagctccaaatagatacaaatacattatataaataacattgttggaaatgttcaataataaccccttgttca |
3672183 |
T |
|
| Q |
320 |
caatctaatctattta |
335 |
Q |
| |
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||||||| |||||||| |
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| T |
3672184 |
caatctattctattta |
3672199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 92 - 310
Target Start/End: Original strand, 44518418 - 44518630
Alignment:
| Q |
92 |
agtttcaatcattgatatttgacagtaccacaacatcattgatgaatattctgccccttttaatttatgggaaatactgtctaacctctaatactgattt |
191 |
Q |
| |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
44518418 |
agtttcgatcattgacatttgacagtaccacaacatcattgatgaatattctgtcccttttaatttatgggatatgctgtctaacctctaatactgattt |
44518517 |
T |
|
| Q |
192 |
ttcacactatacttgcaaattatagttaagctaatttagtcgtagcttaatgcaattagctcgaaatagatacaaaaacactatataactgacactattg |
291 |
Q |
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||||||| |||||| | ||||| || ||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||| | ||||||||| |
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| T |
44518518 |
ttcacaccatacttac-aattactgt-----taatttagttgtagcttaatgcaattagctccaaatagatacaaatacagtatataaataacactattg |
44518611 |
T |
|
| Q |
292 |
gaaaggttcaataataacc |
310 |
Q |
| |
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|||| |||||||||||||| |
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| T |
44518612 |
gaaatgttcaataataacc |
44518630 |
T |
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