View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18596_low_7 (Length: 340)
Name: NF18596_low_7
Description: NF18596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18596_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 121 - 325
Target Start/End: Complemental strand, 27843500 - 27843296
Alignment:
| Q |
121 |
ttgagaaagaattagctccctcgctcggatgttcttgcatcgcctatccttcactcggttgaagggcttcttcgttttattgttgtaatcgtctacttgt |
220 |
Q |
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| T |
27843500 |
ttgagaaagaattagctccctcgctcggatgttcttgcatcgcctatccttcactcagttgaagggcttcttcgttttattgttgtaatcgcctacttgt |
27843401 |
T |
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| Q |
221 |
caaattcaattaacaggacaattatttttaggtgtaagcaaatgtcatatgtcatatcggttgatctcttagaaatgaaattatgtgacgtaataaattg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27843400 |
caaattcaattaacaggacaattatttttaggtgtaagcaaatgtcatatgtcatatcggttgatctcttagaaatgaaattatgtgacgcaataaattg |
27843301 |
T |
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| Q |
321 |
tgttt |
325 |
Q |
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||||| |
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| T |
27843300 |
tgttt |
27843296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 27843653 - 27843564
Alignment:
| Q |
11 |
catcatcactaccgatggtgtccaatcactcattcctaggagcggtttggcgtcgagagtagcaaattgtgggtaatgcgccattatcca |
100 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27843653 |
catcttcactactgatggtgtccaatcactcattcctaggagcggtttggcgtcgagagtagaaaattgtgggtaatgcgccattatcca |
27843564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 13760016 - 13759976
Alignment:
| Q |
121 |
ttgagaaagaattagctccctcgctcggatgttcttgcatc |
161 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
13760016 |
ttgagaaataattatctccctcgctcggatgttctagcatc |
13759976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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