View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_high_10 (Length: 423)
Name: NF18597_high_10
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 35744311 - 35743900
Alignment:
| Q |
1 |
tgaatccagttgaagttaaacgtttgtctttcaatatgtcaccaacgcatatcgtaaaaatagacgaggaaccaataacagaaatggaagtggatgataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744311 |
tgaatccagttgaagttaaacgtttgtctttcaatatgtcaccaacgcatatcgtaaaaatagacgaggaaccaataacagaaatggaagtggatgataa |
35744212 |
T |
|
| Q |
101 |
taagcctgtaaaggatacatcagaggatcttgtctgtgatttggacacaaatgaggatgatcatcatcaaaaaatggttaaacatgatcaagttatggaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744211 |
taagcctgtaaaggatacatcagaggatcttgtctgtgatttggacacaaatgaggatgatcatcatcaaaaaatggttaaacatgatcaagttatggaa |
35744112 |
T |
|
| Q |
201 |
gaagtggagttaccactatctcctaaacaatttcaaccaaattctcctaaaccaacacaaacaccttctcatctgcaacaagcatcaatgtctatttctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35744111 |
gaagtggagttaccactatctcctaaacaatttcaaccaaattctcctaaaccaacacaaacaccttctcatctacaacaagcatcaatgtctatttctt |
35744012 |
T |
|
| Q |
301 |
catcttctcccccaccccctcctcccctacctgcaccattcacgataatgccnnnnnnngtacagatattaccaccctcggcacctccaccaccaccgcc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744011 |
catcttctcccccaccccctcctcccctacctgcaccattc---atgatgccaaaaaaagtacagatattaccaccctcggcacctccaccaccaccgcc |
35743915 |
T |
|
| Q |
401 |
tccgccacctatgct |
415 |
Q |
| |
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||||||||||||||| |
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| T |
35743914 |
tccgccacctatgct |
35743900 |
T |
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