View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18597_high_11 (Length: 418)

Name: NF18597_high_11
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18597_high_11
NF18597_high_11
[»] chr7 (14 HSPs)
chr7 (18-397)||(4846338-4846717)
chr7 (31-216)||(4697688-4697873)
chr7 (29-201)||(4784348-4784520)
chr7 (29-201)||(4816777-4816949)
chr7 (18-201)||(4712579-4712762)
chr7 (29-156)||(4863320-4863447)
chr7 (40-156)||(4643146-4643262)
chr7 (40-156)||(4661246-4661362)
chr7 (90-194)||(4636349-4636453)
chr7 (40-156)||(4666377-4666493)
chr7 (29-145)||(4652951-4653067)
chr7 (18-145)||(4630329-4630456)
chr7 (270-401)||(4712397-4712525)
chr7 (40-156)||(4672082-4672198)
[»] chr4 (1 HSPs)
chr4 (32-156)||(18926297-18926421)


Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 397
Target Start/End: Complemental strand, 4846717 - 4846338
Alignment:
Q  18 acaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatct 117  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4846717 acaggtgtgagtccattgatgtaacctttgtacacgttgccgaaccctccagctccaatgataaaaatatcttcgaagttgtttgtagcttctcttatct 4846618  T
Q  118 ccgctattgtaaaatagcggcacaaatgggacggtaaagttgaggaaccttctttgtttgtcttccatgaactttcttccatttgaagattagattcaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4846617 ccgctattgtaaaatagcggcacaaatgggacggtaaagttgaggaaccttctttgtttgtcttccatgaactttcttccatttgaagattagattcaaa 4846518  T
Q  218 nnnnnnnnnnnnnnnnnnnnnngcataagctatgattcttacgaccaataggaatgccagcaagagacatgaaactccaaccacagcaaccatgagcgtg 317  Q
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4846517 tcttcttcttcttctccttcttgcataagctatgattcttacgaccaataggaatgccagcaagagacatgaaactccaaccacagcaaccatgaacgtg 4846418  T
Q  318 gttgacttctttgactttgatcggtgttttggagatgttggtataatcatgggtttgttgggattcataccagccagatt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4846417 gttgacttctttgactttgatcggtgttttggagatgttggtataatcatgggtttgttgggattcataccagccagatt 4846338  T

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Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 4697873 - 4697688
Alignment:
Q  31 catcgatgtaacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaa 130  Q
    ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  4697873 catcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaa 4697774  T
Q  131 atagcggcacaaatgggacggtaaagttgaggaaccttctttgtttgtcttccatgaactttcttccatttgaagattagattcaa 216  Q
    |||||||||||||||||| ||||||||||| |||||||||||  ||||| ||||||||||||||||||||| || || ||||||||    
T  4697773 atagcggcacaaatgggatggtaaagttgacgaaccttcttttcttgtcctccatgaactttcttccatttcaatatgagattcaa 4697688  T

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Target: chr7; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 4784520 - 4784348
Alignment:
Q  29 tccatcgatgtaacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgta 128  Q
    |||||| || |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  4784520 tccatcaatataacctttgtacacattgccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgta 4784421  T
Q  129 aaatagcggcacaaatgggacggtaaagttgaggaaccttctttgtttgtcttccatgaactttcttccattt 201  Q
    |||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  4784420 aaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttccatgaactttcttccattt 4784348  T

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Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 4816949 - 4816777
Alignment:
Q  29 tccatcgatgtaacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgta 128  Q
    |||||| || |||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| || |||| ||||||||||||    
T  4816949 tccatcaatataacctttgtacacattgccgaaccctccaaccccgatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgta 4816850  T
Q  129 aaatagcggcacaaatgggacggtaaagttgaggaaccttctttgtttgtcttccatgaactttcttccattt 201  Q
    |||||||||||||||||||| |||||| |||||||||||| ||| ||||||||||||||| ||||||| ||||    
T  4816849 aaatagcggcacaaatgggatggtaaacttgaggaaccttgtttctttgtcttccatgaaatttcttcaattt 4816777  T

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Target: chr7; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 4712762 - 4712579
Alignment:
Q  18 acaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatct 117  Q
    |||||| |||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||  ||||||| |    
T  4712762 acaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaaccccgatgataaaaatatcttcgaagttgtttgtagcggctcttattt 4712663  T
Q  118 ccgctattgtaaaatagcggcacaaatgggacggtaaagttgaggaaccttctttgtttgtcttccatgaactttcttccattt 201  Q
    || |||| |||||| | || ||||||||||| |||||| |||| |||||||| || ||| |||||||   |||||||| |||||    
T  4712662 ccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcattatttatcttccaatgactttctttcattt 4712579  T

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Target: chr7; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 4863320 - 4863447
Alignment:
Q  29 tccatcgatgtaacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgta 128  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||  |||||||||| | |||||||    
T  4863320 tccatcaatataacctttgtacacgttgccgaaccctccaactccaatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgta 4863419  T
Q  129 aaatagcggcacaaatgggacggtaaag 156  Q
    |||||||||||||||||||| |||||||    
T  4863420 aaatagcggcacaaatgggatggtaaag 4863447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 4643146 - 4643262
Alignment:
Q  40 aacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggca 139  Q
    ||||||||||||||||||| |||||||||||||| |||||||||  ||| |||||||||||||||||| || | ||||| || ||||||||  |||||||    
T  4643146 aacctttgtacacgttgccaaaccctccaactccgatgataaaagcatcatcgaagttgtttgtagctgctttgatctctgcgattgtaaaggagcggca 4643245  T
Q  140 caaatgggacggtaaag 156  Q
    || ||||| ||| ||||    
T  4643246 cagatggggcggcaaag 4643262  T

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Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 4661246 - 4661362
Alignment:
Q  40 aacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggca 139  Q
    ||||||||||||||||||| |||||||||||||||||||| |||  ||| || ||||| ||||| ||| |||| ||||| || |||||||| ||||||||    
T  4661246 aacctttgtacacgttgccaaaccctccaactccaatgatgaaatcatcatcaaagttttttgtggctgctctgatctctgcaattgtaaagtagcggca 4661345  T
Q  140 caaatgggacggtaaag 156  Q
    |||||||| ||| ||||    
T  4661346 caaatggggcggcaaag 4661362  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 4636349 - 4636453
Alignment:
Q  90 tcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggcacaaatgggacggtaaagttgaggaaccttctttgtttgtcttccatgaac 189  Q
    |||||||| ||||| ||| |||| ||||| || |||||||| ||||||||||||| ||| ||||||||||| |||||||| || ||||| |||||| |||    
T  4636349 tcgaagttttttgtggctgctctgatctctgcgattgtaaagtagcggcacaaataggatggtaaagttgacgaaccttcattctttgttttccataaac 4636448  T
Q  190 tttct 194  Q
    |||||    
T  4636449 tttct 4636453  T

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Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 4666377 - 4666493
Alignment:
Q  40 aacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggca 139  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||  ||| || ||||||||||| ||| |||| ||||| || ||||||||  | |||||    
T  4666377 aacctttgtacacgttgccaaaccctccaactccgatgatgaaatcatcgtcaaagttgtttgtggctgctctgatctctgcaattgtaaaggaccggca 4666476  T
Q  140 caaatgggacggtaaag 156  Q
    |||||||| ||| ||||    
T  4666477 caaatggggcggcaaag 4666493  T

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Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 4652951 - 4653067
Alignment:
Q  29 tccatcgatgtaacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgta 128  Q
    |||||||||| ||||||||||||||||||| || |||||||| || ||||| |||| ||| |||||||| ||||| ||| || | ||||| || |||||     
T  4652951 tccatcgatgcaacctttgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagttatttgtggctgctttgatctctgcgattgtg 4653050  T
Q  129 aaatagcggcacaaatg 145  Q
    ||  |||| ||||||||    
T  4653051 aaggagcgacacaaatg 4653067  T

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Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 4630329 - 4630456
Alignment:
Q  18 acaggtgtgagtccatcgatgtaacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatct 117  Q
    |||||||||  ||||||||   |||||||||||||||| || |||||||||| ||| ||||| |||  ||  || ||||||||||| ||| || | ||||    
T  4630329 acaggtgtggatccatcgacacaacctttgtacacgttcccaaaccctccaaatccgatgatgaaatcattgtcaaagttgtttgtggctgctttgatct 4630428  T
Q  118 ccgctattgtaaaatagcggcacaaatg 145  Q
    |||| |||||||| ||||| ||||||||    
T  4630429 ccgcgattgtaaagtagcgacacaaatg 4630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 401
Target Start/End: Complemental strand, 4712525 - 4712397
Alignment:
Q  270 aatgccagcaagagacatgaaactccaaccacagcaaccatgagcgtggttgacttctttgactttgatcggtgttttggagatgttggtataatcatgg 369  Q
    ||||| |||||||||||||| | |||||||| ||||| |||||   ||| ||| ||||| ||||| |||||  | |||||||||| |||||||   |||     
T  4712525 aatgctagcaagagacatgataatccaaccaaagcaaacatgactatgggtgatttcttcgacttcgatcgtcgatttggagatgatggtata---atgt 4712429  T
Q  370 gtttgttgggattcataccagccagattattt 401  Q
    ||||| ||||||||| |||||| |||||||||    
T  4712428 gtttgatgggattcaaaccagcgagattattt 4712397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 4672082 - 4672198
Alignment:
Q  40 aacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggca 139  Q
    |||||||||||| ||| || |||||||||||||| |||||| ||  ||| |||||||||||||| ||| || | ||||| || ||||||||  | |||||    
T  4672082 aacctttgtacaggtttccaaaccctccaactccgatgatagaagcatcatcgaagttgtttgtggctgctttgatctctgcgattgtaaaggaacggca 4672181  T
Q  140 caaatgggacggtaaag 156  Q
    ||| |||| ||| ||||    
T  4672182 caagtggggcggcaaag 4672198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 156
Target Start/End: Complemental strand, 18926421 - 18926297
Alignment:
Q  32 atcgatgtaacctttgtacacgttgccgaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaa 131  Q
    ||||||| ||||||| ||||||||||| |||||||||||||| ||||| |||  ||| || ||||| ||||| ||| || ||||||| || ||||||||     
T  18926421 atcgatgaaacctttatacacgttgccaaaccctccaactccgatgattaaatcatcatcaaagttatttgtggctgcttttatctctgcaattgtaaag 18926322  T
Q  132 tagcggcacaaatgggacggtaaag 156  Q
    |||||||||||||||| ||||||||    
T  18926321 tagcggcacaaatggggcggtaaag 18926297  T

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