View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18597_high_13 (Length: 381)
Name: NF18597_high_13
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18597_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 36727751 - 36727530
Alignment:
| Q |
3 |
gatgtcgaagaatatagtagcaccatcaaaagccatggcttaatttagggccaaatgatttgtttctttttctttgagttaattaaaagcttacagttac |
102 |
Q |
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| T |
36727751 |
gatgtagaagaaaatagtagcaccatcaaaagccatggcttaatttagggccaaatgacttgtttctttttctttgagttaattaaaagcttacagttac |
36727652 |
T |
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| Q |
103 |
gagatgcaaaacatctattatgtgatgtcttactta---tattgaatcagctgcttttttaatcaataaaaatagaatcccaaattgcttaatcatacca |
199 |
Q |
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| T |
36727651 |
aagatgcaaaacatctattatgtgatgtcttacttatattattgaatcagctgcttttttaatcaataaaaatagaatcccaaattgcttaatcatacca |
36727552 |
T |
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| Q |
200 |
taaaattgttagaaactctttc |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
36727551 |
taaaattgttagaaactctttc |
36727530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 243 - 363
Target Start/End: Complemental strand, 36727480 - 36727360
Alignment:
| Q |
243 |
caaaattagttaatagtattagtaactataaaactctttaactttagaaaataaataaaataataatgaattatttgttatatcataacttaatatattc |
342 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36727480 |
caaaattagttaatagtattagtaactatacaactctttaactttagaaaacaaataaaataataatgaattatttgttatatcataacttaatatattc |
36727381 |
T |
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| Q |
343 |
taacattatcagactacaatt |
363 |
Q |
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| T |
36727380 |
taacattatcagactacaatt |
36727360 |
T |
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