View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18597_high_28 (Length: 238)

Name: NF18597_high_28
Description: NF18597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18597_high_28
NF18597_high_28
[»] chr7 (20 HSPs)
chr7 (1-221)||(22932727-22932947)
chr7 (10-62)||(48125199-48125251)
chr7 (10-61)||(22760863-22760914)
chr7 (10-61)||(43215184-43215235)
chr7 (15-61)||(33460453-33460499)
chr7 (8-61)||(42836024-42836077)
chr7 (10-61)||(2446308-2446359)
chr7 (10-61)||(25021360-25021411)
chr7 (10-61)||(26459435-26459486)
chr7 (10-61)||(48771938-48771989)
chr7 (23-61)||(3280523-3280561)
chr7 (10-56)||(28236606-28236652)
chr7 (15-61)||(30579335-30579381)
chr7 (15-61)||(41487362-41487408)
chr7 (22-63)||(5273627-5273668)
chr7 (16-61)||(39631844-39631889)
chr7 (25-61)||(4161288-4161324)
chr7 (1-61)||(7801180-7801240)
chr7 (10-58)||(15905698-15905746)
chr7 (22-62)||(39499756-39499796)
[»] scaffold0258 (1 HSPs)
scaffold0258 (10-61)||(15348-15399)
[»] chr6 (9 HSPs)
chr6 (10-57)||(10338199-10338246)
chr6 (10-61)||(33549104-33549155)
chr6 (10-61)||(31623016-31623067)
chr6 (9-58)||(13441053-13441102)
chr6 (22-63)||(14557960-14558001)
chr6 (10-61)||(12188328-12188379)
chr6 (26-61)||(30127400-30127435)
chr6 (8-61)||(22694-22747)
chr6 (10-62)||(21418469-21418521)
[»] scaffold0070 (1 HSPs)
scaffold0070 (16-58)||(38933-38975)
[»] chr8 (13 HSPs)
chr8 (10-61)||(6530807-6530858)
chr8 (8-61)||(22268956-22269009)
chr8 (10-62)||(968361-968413)
chr8 (10-62)||(6436580-6436632)
chr8 (10-62)||(43969023-43969075)
chr8 (10-61)||(16852340-16852391)
chr8 (15-62)||(18540297-18540344)
chr8 (10-61)||(26688865-26688916)
chr8 (10-61)||(28783060-28783111)
chr8 (1-59)||(3624582-3624640)
chr8 (10-59)||(2203494-2203543)
chr8 (16-61)||(34986102-34986147)
chr8 (17-57)||(33692334-33692374)
[»] chr5 (13 HSPs)
chr5 (10-61)||(30883223-30883274)
chr5 (16-62)||(21589287-21589333)
chr5 (141-189)||(15628760-15628808)
chr5 (10-62)||(16457809-16457861)
chr5 (10-62)||(16773806-16773858)
chr5 (10-61)||(8278300-8278351)
chr5 (22-61)||(15057488-15057527)
chr5 (10-61)||(21549162-21549213)
chr5 (10-61)||(30109333-30109384)
chr5 (10-61)||(34984806-34984857)
chr5 (24-61)||(22737082-22737119)
chr5 (16-61)||(31669055-31669100)
chr5 (1-61)||(18989017-18989077)
[»] chr2 (12 HSPs)
chr2 (10-61)||(39714992-39715043)
chr2 (17-61)||(3697431-3697475)
chr2 (10-62)||(42327420-42327472)
chr2 (22-61)||(37480075-37480114)
chr2 (10-61)||(42602554-42602605)
chr2 (15-53)||(21213777-21213815)
chr2 (25-63)||(26545838-26545876)
chr2 (22-60)||(37756008-37756046)
chr2 (1-61)||(19322768-19322828)
chr2 (10-62)||(26482092-26482144)
chr2 (10-58)||(30359657-30359705)
chr2 (10-62)||(42922413-42922465)
[»] chr1 (12 HSPs)
chr1 (10-61)||(37046985-37047036)
chr1 (10-61)||(952511-952562)
chr1 (10-61)||(9165220-9165271)
chr1 (10-61)||(15581166-15581217)
chr1 (10-61)||(19528352-19528403)
chr1 (10-61)||(40257399-40257450)
chr1 (15-61)||(34228874-34228920)
chr1 (16-61)||(1690108-1690153)
chr1 (22-62)||(2219971-2220011)
chr1 (1-57)||(4824975-4825031)
chr1 (10-62)||(31794289-31794341)
chr1 (22-62)||(37400273-37400313)
[»] chr3 (15 HSPs)
chr3 (8-54)||(17554778-17554824)
chr3 (10-62)||(2597245-2597297)
chr3 (13-61)||(9832497-9832545)
chr3 (25-61)||(36720381-36720417)
chr3 (22-61)||(8051214-8051253)
chr3 (10-61)||(46518628-46518679)
chr3 (10-60)||(18316523-18316573)
chr3 (27-61)||(24478155-24478189)
chr3 (16-61)||(10499140-10499185)
chr3 (16-61)||(26871535-26871580)
chr3 (10-59)||(42799772-42799821)
chr3 (25-62)||(47079700-47079737)
chr3 (17-61)||(3054994-3055038)
chr3 (10-62)||(4222140-4222192)
chr3 (29-61)||(47810788-47810820)
[»] chr4 (13 HSPs)
chr4 (16-61)||(55427231-55427276)
chr4 (10-57)||(4911257-4911304)
chr4 (10-61)||(19238602-19238653)
chr4 (10-61)||(24827825-24827876)
chr4 (10-61)||(29195095-29195146)
chr4 (10-61)||(37109376-37109427)
chr4 (10-61)||(51250547-51250598)
chr4 (15-61)||(37720244-37720290)
chr4 (24-61)||(13496241-13496278)
chr4 (17-61)||(6606058-6606102)
chr4 (10-58)||(7292823-7292871)
chr4 (25-61)||(9241065-9241101)
chr4 (15-59)||(40284016-40284060)
[»] scaffold0260 (1 HSPs)
scaffold0260 (24-61)||(15360-15397)
[»] scaffold0517 (1 HSPs)
scaffold0517 (22-62)||(7763-7803)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22932727 - 22932947
Alignment:
Q  1 cttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttctcttcctttaaacttagctcagcacaacctatagtatg 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22932727 cttgaataagagcgcactcccaggtcccaagccaataccaccataccaacccaagtgggttctcttcctttaaacttagctcagcacaacctatagtatg 22932826  T
Q  101 cttgtttgttccatcaaaaatatcatatctcaagcccttaccttagctgatttctcttgttcatcatgccaacccatcttcaattcttggtaacattttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22932827 cttgtttgttccatcaaaaatatcatatctcaagcccttaccttagctgatttctcttgttcatcatgccaacccatcttcaattcttggtaacattttt 22932926  T
Q  201 gccattcctttttgttcaagt 221  Q
    |||||||||||||||||||||    
T  22932927 gccattcctttttgttcaagt 22932947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 48125199 - 48125251
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  48125199 gagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggttc 48125251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 22760914 - 22760863
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||| ||||||||||| |||||||||||||||||    
T  22760914 gagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 43215235 - 43215184
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||| | |||||||||||||||||    
T  43215235 gagcacactccgaggtcccaagccaataccactagaccaacccaagtgggtt 43215184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 33460453 - 33460499
Alignment:
Q  15 cactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||||    
T  33460453 cactcctaggtcccaaaccaataccaccaaaccaacccaggtgggtt 33460499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 42836024 - 42836077
Alignment:
Q  8 aagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  42836024 aagagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42836077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 2446359 - 2446308
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| | ||||||||||||||||| || |||||||||||||||||    
T  2446359 gagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtt 2446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 25021360 - 25021411
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  25021360 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 26459435 - 26459486
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  26459435 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 48771989 - 48771938
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| || |||||||||||||||||||  ||||||||||||||||    
T  48771989 gagcacactcccagatcccaagccaataccaccaagccaacccaagtgggtt 48771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 3280523 - 3280561
Alignment:
Q  23 ggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  3280523 ggtcccaagccaataccaccatgtcaacccaagtgggtt 3280561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 28236606 - 28236652
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagt 56  Q
    ||||||||||| ||||||||||||||||||| || | ||||||||||    
T  28236606 gagcgcactcccaggtcccaagccaataccatcaaatcaacccaagt 28236652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 30579381 - 30579335
Alignment:
Q  15 cactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  30579381 cactcccaggtctcaagccaataccaccaggccaacccaagtgggtt 30579335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 41487408 - 41487362
Alignment:
Q  15 cactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||| | ||||||||||||||||||||  ||||||||||||||||    
T  41487408 cactcccaagtcccaagccaataccaccaggccaacccaagtgggtt 41487362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 5273627 - 5273668
Alignment:
Q  22 aggtcccaagccaataccaccataccaacccaagtgggttct 63  Q
    |||||||||||||| |||||||  ||||||||||||||||||    
T  5273627 aggtcccaagccaacaccaccaggccaacccaagtgggttct 5273668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 39631889 - 39631844
Alignment:
Q  16 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||| |||||||||||||||||||| |  ||||||||||||||||    
T  39631889 actcccaggtcccaagccaataccactaggccaacccaagtgggtt 39631844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 4161324 - 4161288
Alignment:
Q  25 tcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  4161324 tcccaagccaataccaccagaccaacccaaatgggtt 4161288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7801240 - 7801180
Alignment:
Q  1 cttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||| | |||| |||||| |||||||||| |||||||||||  |||| |||||||||||    
T  7801240 cttgaagaggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 15905698 - 15905746
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 58  Q
    |||| |||||| |||||||||||||||||| |||  |||||||||||||    
T  15905698 gagcacactcccaggtcccaagccaataccgccaggccaacccaagtgg 15905746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 39499756 - 39499796
Alignment:
Q  22 aggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||||||||||||||||||| |  |||||||||||||||||    
T  39499756 aggtcccaagccaataccactaggccaacccaagtgggttc 39499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 15348 - 15399
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||||| |||||||||||||||||    
T  15348 gagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 15399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 10338199 - 10338246
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtg 57  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  10338199 gagcacactcctaggtcccaagccaataccaccatgccaacccaagtg 10338246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 33549155 - 33549104
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||||| |||||||||||||||||    
T  33549155 gagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 31623016 - 31623067
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||||  |||||||||||||||||    
T  31623016 gagcacactcccaggtcccaagccaataccaccggaccaacccaagtgggtt 31623067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 13441102 - 13441053
Alignment:
Q  9 agagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 58  Q
    ||||| |||||| |||||||||||||||||||||  ||||||||||||||    
T  13441102 agagcacactcccaggtcccaagccaataccacccgaccaacccaagtgg 13441053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 14558001 - 14557960
Alignment:
Q  22 aggtcccaagccaataccaccataccaacccaagtgggttct 63  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  14558001 aggtcccaagccaacaccaccagaccaacccaagtgggttct 14557960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 12188328 - 12188379
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  12188328 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 12188379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 30127435 - 30127400
Alignment:
Q  26 cccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||||||||||||||| |||||||||||||||||    
T  30127435 cccaagccaataccaccagaccaacccaagtgggtt 30127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 22694 - 22747
Alignment:
Q  8 aagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||| |||||| |||||||||||||| ||||| |  ||||||||||||||||    
T  22694 aagagcacactccaaggtcccaagccaaaaccactagcccaacccaagtgggtt 22747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 21418521 - 21418469
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||| | ||||||||||||||||||||  ||||||||| |||||||    
T  21418521 gagcacactcccaagtcccaagccaataccaccaggccaacccaactgggttc 21418469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 38933 - 38975
Alignment:
Q  16 actcctaggtcccaagccaataccaccataccaacccaagtgg 58  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  38933 actcctaggtcccaagccaataccaccagaccaacccaagtgg 38975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 6530858 - 6530807
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| ||||||||||||||||||||| |||||||  ||||||||||||||||    
T  6530858 gagcacactcctaggtcccaagccaacaccaccaggccaacccaagtgggtt 6530807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 22268956 - 22269009
Alignment:
Q  8 aagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||| |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  22268956 aagagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 22269009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 968413 - 968361
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||| ||||||||||||||||||||||  ||||| |||||||||||    
T  968413 gagcacactcccaggtcccaagccaataccaccaggccaactcaagtgggttc 968361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 6436580 - 6436632
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||||| ||||||||||||||||||||   ||||||||||||||||    
T  6436580 gagcacactcctaagtcccaagccaataccaccagggcaacccaagtgggttc 6436632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 43969023 - 43969075
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||||| | ||||||||||||||| ||| |||||||||||||||||    
T  43969023 gagcacactcctaagccccaagccaataccatcatgccaacccaagtgggttc 43969075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 16852391 - 16852340
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  16852391 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 16852340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 18540344 - 18540297
Alignment:
Q  15 cactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||||| |||||||||||||||||||| |  |||||||||||||||||    
T  18540344 cactcccaggtcccaagccaataccactaggccaacccaagtgggttc 18540297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 26688916 - 26688865
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  26688916 gagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 26688865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 28783111 - 28783060
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  28783111 gagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3624640 - 3624582
Alignment:
Q  1 cttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtggg 59  Q
    |||||| | |||| |||||| |||||||||||||||||||| |  ||||||||||||||    
T  3624640 cttgaagaggagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 3624582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 2203543 - 2203494
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtggg 59  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||    
T  2203543 gagcacactcccaggtcccaagccaataccactaggccaacccaagtggg 2203494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 34986147 - 34986102
Alignment:
Q  16 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||| ||||||||| |||||||||||| | |||||||||||||||    
T  34986147 actcccaggtcccaaaccaataccaccagaacaacccaagtgggtt 34986102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 33692334 - 33692374
Alignment:
Q  17 ctcctaggtcccaagccaataccaccataccaacccaagtg 57  Q
    |||||| ||| |||||||||||||||| |||||||||||||    
T  33692334 ctcctatgtctcaagccaataccaccaaaccaacccaagtg 33692374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 30883223 - 30883274
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||| | |||||||||||||||||    
T  30883223 gagcacactcccaggtcccaagccaataccactagaccaacccaagtgggtt 30883274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 21589333 - 21589287
Alignment:
Q  16 actcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    ||||| ||||||||||||||||||||||  |||||||||||||||||    
T  21589333 actcccaggtcccaagccaataccaccaggccaacccaagtgggttc 21589287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 15628808 - 15628760
Alignment:
Q  141 ccttagctgatttctcttgttcatcatgccaacccatcttcaattcttg 189  Q
    |||||||||| ||||||| |||||||||||||||| | |||||||||||    
T  15628808 ccttagctgaattctcttattcatcatgccaacccttgttcaattcttg 15628760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 16457861 - 16457809
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||| ||||||||||||||||||||||  |||||| ||||||||||    
T  16457861 gagcacactccaaggtcccaagccaataccaccaggccaacctaagtgggttc 16457809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 16773858 - 16773806
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||| |||||||||| ||||||||||| |||||| |||||||||||    
T  16773858 gagcacactcccaggtcccaagtcaataccaccagaccaactcaagtgggttc 16773806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 8278300 - 8278351
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| | ||||||||||||||||| || |||||||||||||||||    
T  8278300 gagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtt 8278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 15057488 - 15057527
Alignment:
Q  22 aggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| ||||||||| |||||||||||||||||||||||||    
T  15057488 aggttccaagccaacaccaccataccaacccaagtgggtt 15057527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 21549162 - 21549213
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  21549162 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 30109333 - 30109384
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  30109333 gagcacactcccaggtcacaagccaataccaccaagccaacccaagtgggtt 30109384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 34984857 - 34984806
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||| ||||||||||||||| | |||||||||||||||||    
T  34984857 gagcacactcccaggttccaagccaataccactagaccaacccaagtgggtt 34984806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 22737119 - 22737082
Alignment:
Q  24 gtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||||||||||||||| | |||||||||||||||||    
T  22737119 gtcccaagccaataccactagaccaacccaagtgggtt 22737082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 31669055 - 31669100
Alignment:
Q  16 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||| |||||||||||||| |||| || |||||||||||||||||    
T  31669055 actccaaggtcccaagccaacaccatcagaccaacccaagtgggtt 31669100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18989017 - 18989077
Alignment:
Q  1 cttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||| | |||| |||||| |||||||||||||| |||| ||| | ||||||||||||||    
T  18989017 cttgaagaggagcacactccaaggtcccaagccaacaccatcatgcaaacccaagtgggtt 18989077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 39715043 - 39714992
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||| |||||||||||| ||||||||||||||||    
T  39715043 gagcacactcccaggtcccaagtcaataccaccatgccaacccaagtgggtt 39714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 3697431 - 3697475
Alignment:
Q  17 ctcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| ||||||||||||||||||| || |||||||||||||||||    
T  3697431 ctccaaggtcccaagccaataccatcagaccaacccaagtgggtt 3697475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 42327420 - 42327472
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||| |||||||||||||||||||| |  |||||||||||||||||    
T  42327420 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttc 42327472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 37480114 - 37480075
Alignment:
Q  22 aggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  37480114 aggtcccaagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 42602605 - 42602554
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  42602605 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42602554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 21213815 - 21213777
Alignment:
Q  15 cactcctaggtcccaagccaataccaccataccaaccca 53  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  21213815 cactcccaggtcccaagccaataccaccagaccaaccca 21213777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 26545876 - 26545838
Alignment:
Q  25 tcccaagccaataccaccataccaacccaagtgggttct 63  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  26545876 tcccaagctaataccaccaaaccaacccaagtgggttct 26545838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 37756008 - 37756046
Alignment:
Q  22 aggtcccaagccaataccaccataccaacccaagtgggt 60  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  37756008 aggtcccaagccaataccaccaagccaacccaagtgggt 37756046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19322828 - 19322768
Alignment:
Q  1 cttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||| | |||| |||||| ||||||||| |||||||||| | | |||||||||||||||    
T  19322828 cttgaagaggagcacactcccaggtcccaaaccaataccactagatcaacccaagtgggtt 19322768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 26482144 - 26482092
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| ||||||||||||||||||||| |||| ||  |||||| ||||||||||    
T  26482144 gagcacactcctaggtcccaagccaacaccatcaggccaacctaagtgggttc 26482092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 30359705 - 30359657
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 58  Q
    |||| |||||| |||||||||||||| |||||||  |||||||||||||    
T  30359705 gagcacactccaaggtcccaagccaacaccaccaagccaacccaagtgg 30359657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 42922465 - 42922413
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||| |||| ||||||||||||||| |  |||||||||||||||||    
T  42922465 gagcacactcccaggttccaagccaataccactaggccaacccaagtgggttc 42922413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 37047036 - 37046985
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||| ||||||| |||||||||||||||||    
T  37047036 gagcacactccaaggtcccaagccaacaccaccagaccaacccaagtgggtt 37046985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 952562 - 952511
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  952562 gagcacactcccaggtcccaagccaacaccaccagaccaactcaagtgggtt 952511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 9165220 - 9165271
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  9165220 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 15581166 - 15581217
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  15581166 gagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 15581217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 19528352 - 19528403
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| ||||| ||| |||||||||||||||||||  ||||||||||||||||    
T  19528352 gagcacactcatagatcccaagccaataccaccaggccaacccaagtgggtt 19528403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 40257450 - 40257399
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| ||||| ||||||||||||||||  ||||||||||||||||    
T  40257450 gagcacactcccaggtctcaagccaataccaccaggccaacccaagtgggtt 40257399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 34228920 - 34228874
Alignment:
Q  15 cactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||| |||||||||||||| ||||||| |||||| ||||||||||    
T  34228920 cactccgaggtcccaagccaacaccaccagaccaactcaagtgggtt 34228874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 1690108 - 1690153
Alignment:
Q  16 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||| |||||||||||||||||||||| |||||  ||||||||||    
T  1690108 actcccaggtcccaagccaataccaccagaccaattcaagtgggtt 1690153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 2220011 - 2219971
Alignment:
Q  22 aggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| ||||||||||||||||| | ||||||||||||||||    
T  2220011 aggttccaagccaataccaccagaacaacccaagtgggttc 2219971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4825031 - 4824975
Alignment:
Q  1 cttgaataagagcgcactcctaggtcccaagccaataccaccataccaacccaagtg 57  Q
    |||||| | |||| |||||| |||||||||||||| |||| || |||||||||||||    
T  4825031 cttgaagaggagcacactccaaggtcccaagccaacaccatcagaccaacccaagtg 4824975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 31794289 - 31794341
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||| | |||||||||||||||||| |  |||||||||||||||||    
T  31794289 gagcacactcccaagtcccaagccaataccactaggccaacccaagtgggttc 31794341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 37400313 - 37400273
Alignment:
Q  22 aggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    ||||| |||||||||||||||| |||||||||||| |||||    
T  37400313 aggtctcaagccaataccaccagaccaacccaagttggttc 37400273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 17554824 - 17554778
Alignment:
Q  8 aagagcgcactcctaggtcccaagccaataccaccataccaacccaa 54  Q
    |||||| |||||| |||||||||||||||||||||| ||||||||||    
T  17554824 aagagcacactcccaggtcccaagccaataccaccaaaccaacccaa 17554778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 2597245 - 2597297
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| ||||||||  ||| ||||||||||||||| ||||||||||||||||||    
T  2597245 gagcacactcctaaatccgaagccaataccaccagaccaacccaagtgggttc 2597297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 9832545 - 9832497
Alignment:
Q  13 cgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||||| |||||||||||||||||||||   ||||||||||||||||    
T  9832545 cgcactcccaggtcccaagccaataccaccgggccaacccaagtgggtt 9832497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 36720417 - 36720381
Alignment:
Q  25 tcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||||||||||||||||| |||||||||||||||||    
T  36720417 tcccaagccaataccaccagaccaacccaagtgggtt 36720381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 8051253 - 8051214
Alignment:
Q  22 aggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  8051253 aggtcccaagccaataccaccaggccaacccaagtgggtt 8051214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 46518679 - 46518628
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| || ||||||||||||||||| || ||||||||||||||||    
T  46518679 gagcacactcccagatcccaagccaataccactatgccaacccaagtgggtt 46518628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 18316523 - 18316573
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggt 60  Q
    |||| |||||| |||||||||||||  ||||||| ||||||||||||||||    
T  18316523 gagcacactccaaggtcccaagccagcaccaccagaccaacccaagtgggt 18316573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 24478189 - 24478155
Alignment:
Q  27 ccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||||||||||||||| |||||||||||||||||    
T  24478189 ccaagccaataccaccaaaccaacccaagtgggtt 24478155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 10499140 - 10499185
Alignment:
Q  16 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||| || |||||||||||||||||||  ||||||||||||||||    
T  10499140 actcccagatcccaagccaataccaccaggccaacccaagtgggtt 10499185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 26871535 - 26871580
Alignment:
Q  16 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||| |||||||||||||| |||||||  ||||||||||||||||    
T  26871535 actccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 26871580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 42799772 - 42799821
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtggg 59  Q
    |||| |||||| |||||||||||||| |||||||  ||||||||||||||    
T  42799772 gagcacactccaaggtcccaagccaacaccaccaggccaacccaagtggg 42799821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 47079737 - 47079700
Alignment:
Q  25 tcccaagccaataccaccataccaacccaagtgggttc 62  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  47079737 tcccaagccaacaccaccagaccaacccaagtgggttc 47079700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 3055038 - 3054994
Alignment:
Q  17 ctcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||||||||||| |||||||  ||||||||||||||||    
T  3055038 ctccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 3054994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 4222192 - 4222140
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    |||| |||||| || ||||||||||||||||| |  |||||||||||||||||    
T  4222192 gagcacactcccagatcccaagccaataccactaagccaacccaagtgggttc 4222140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 47810788 - 47810820
Alignment:
Q  29 aagccaataccaccataccaacccaagtgggtt 61  Q
    ||||||||||||||| |||||||||||||||||    
T  47810788 aagccaataccaccagaccaacccaagtgggtt 47810820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 55427231 - 55427276
Alignment:
Q  16 actcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||| ||||||||||||||||||||||  ||||||||||||||||    
T  55427231 actcccaggtcccaagccaataccaccaggccaacccaagtgggtt 55427276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 4911257 - 4911304
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtg 57  Q
    |||| |||||||| ||||||||| |||||||||| |||||||||||||    
T  4911257 gagcacactcctaagtcccaagctaataccaccagaccaacccaagtg 4911304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 19238602 - 19238653
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| | ||||||||||||||||||||  ||||||||||||||||    
T  19238602 gagcacactcccaagtcccaagccaataccaccaggccaacccaagtgggtt 19238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 24827876 - 24827825
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    ||||||||||| |||||||||| ||||||||||  ||||||| |||||||||    
T  24827876 gagcgcactcccaggtcccaagtcaataccaccggaccaaccaaagtgggtt 24827825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 29195146 - 29195095
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||| |||||||  ||||||||||||||||    
T  29195146 gagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggtt 29195095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 37109376 - 37109427
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| |||||||||||||||||||| |  ||||||||||||||||    
T  37109376 gagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 61
Target Start/End: Original strand, 51250547 - 51250598
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||| || |||||||||||||||||||  ||||||||||||||||    
T  51250547 gagcacactcccagatcccaagccaataccaccaggccaacccaagtgggtt 51250598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 37720244 - 37720290
Alignment:
Q  15 cactcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||| |||||||||||||||| |||||  ||||||||||||||||    
T  37720244 cactcccaggtcccaagccaataacaccaggccaacccaagtgggtt 37720290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 13496278 - 13496241
Alignment:
Q  24 gtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  13496278 gtcccaagtcaataccaccatgccaacccaagtgggtt 13496241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 6606102 - 6606058
Alignment:
Q  17 ctcctaggtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||| |||||||||||||| |||| || |||||||||||||||||    
T  6606102 ctccaaggtcccaagccaacaccatcagaccaacccaagtgggtt 6606058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 7292823 - 7292871
Alignment:
Q  10 gagcgcactcctaggtcccaagccaataccaccataccaacccaagtgg 58  Q
    |||| |||||| |||| ||||||||||||||| | ||||||||||||||    
T  7292823 gagcacactcccaggttccaagccaataccactagaccaacccaagtgg 7292871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 9241065 - 9241101
Alignment:
Q  25 tcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||||||||||||||||  ||||||||||||||||    
T  9241065 tcccaagccaataccaccaggccaacccaagtgggtt 9241101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 40284016 - 40284060
Alignment:
Q  15 cactcctaggtcccaagccaataccaccataccaacccaagtggg 59  Q
    |||||| | ||||||||||||||||| ||| ||||||||||||||    
T  40284016 cactcccaagtcccaagccaataccatcatgccaacccaagtggg 40284060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 15360 - 15397
Alignment:
Q  24 gtcccaagccaataccaccataccaacccaagtgggtt 61  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  15360 gtcccaagccaacaccaccagaccaacccaagtgggtt 15397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 7763 - 7803
Alignment:
Q  22 aggtcccaagccaataccaccataccaacccaagtgggttc 62  Q
    ||||| |||||||||||||||| |||||||||||| |||||    
T  7763 aggtctcaagccaataccaccagaccaacccaagttggttc 7803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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